Evidence map›Paper›PMID 26228655›Full record

ArticleBMC cancer2015

XAB2 tagSNPs contribute to non-small cell lung cancer susceptibility in Chinese population.

Na Pei, Lei Cao, Yingwen Liu, Jing Wu, Qinqin Song, Zhi Zhang, Juxiang Yuan, Xuemei Zhang

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Na PeiInstitute of Molecular Genetics, College of Life Sciences, Hebei United University, Tangshan, 063000, China. sunshinenapei.2013@gmail.com.
Lei CaoInstitute of Molecular Genetics, College of Life Sciences, Hebei United University, Tangshan, 063000, China. cao_lei2006@163.com.
Yingwen LiuInstitute of Molecular Genetics, College of Life Sciences, Hebei United University, Tangshan, 063000, China. LYW814098915@sina.cn.
Jing WuInstitute of Molecular Genetics, College of Life Sciences, Hebei United University, Tangshan, 063000, China. wujing19900801@163.com.
Qinqin SongTangshan Gongren Hospital, Hebei United University, Tangshan, China. songqinqin804@163.com.
Zhi ZhangTangshan Gongren Hospital, Hebei United University, Tangshan, China. zhi1969@163.com.
Juxiang YuanDepartment of Epidemiology, College of Public Health, Hebei United University, Tangshan, 063000, China. yuanjx@heuu.edu.cn.
Xuemei ZhangInstitute of Molecular Genetics, College of Life Sciences, Hebei United University, Tangshan, 063000, China. jyxuemei@gmail.com.
North China University of Science and Technology · CNTangshan Gongren Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundXPA-binding protein 2 (XAB2) interacts with Cockayne syndrome complementation group A (CSA), group B (CSB) and RNA polymerase II to initiate nucleotide excision repair. This study aims to evaluate the association of XAB2 genetic variants with the risk of non-small cell lung cancer (NSCLC) using a tagging approach.

methodsA hospital-based case-control study was conducted in 470 patients with NSCLC and 470 controls in Chinese population. Totally, 5 tag single nucleotide polymorphisms (SNPs) in XAB2 gene were selected by Haploview software using Hapmap database. Genotyping was performed using iPlex Gold Genotyping Asssy and Sequenom MassArray. Unconditional logistic regression was conducted to estimate odd ratios (ORs) and 95 % confidence intervals (95 % CI).

resultsUnconditional logistic regression analysis showed that the XAB2 genotype with rs794078 AA or at least one rs4134816 C allele were associated with the decreased risk of NSCLC with OR (95 % CI) of 0.12 (0.03-0.54) and 0.46 (0.26-0.84). When stratified by gender, we found that the subjects carrying rs4134816 CC or CT genotype had a decreased risk for developing NSCLC among males with OR (95 % CI) of 0.39 (0.18-0.82), but not among females. In age stratification analysis, we found that younger subjects (age ≤ 60) with at least one C allele had a decreased risk of NSCLC with OR (95 % CI) of 0.35 (0.17-0.74), but older subjects didn't. We didn't find that XAB2 4134816 C > T variant effect on the risk of NSCLC when stratified by smoking status. The environmental factors, such as age, sex and smoking had no effect on the risk of NSCLC related to XAB2 genotypes at other polymorphic sites.

conclusionsThe XAB2 tagSNPs (rs794078 and rs4134816) were significantly associated with the risk of NSCLC in Chinese population, which supports the XAB2 plays a significant role in the development of NSCLC.

Indexed as

Polymorphism, Single NucleotideAdultAgedAge FactorsAsian PeopleCarcinoma, Non-Small-Cell LungCase-Control StudiesChinaFemaleGenetic Predisposition to DiseaseHumansLung NeoplasmsMaleMiddle AgedRNA Splicing FactorsSex FactorsRNA Splicing FactorsTranscription FactorsXAB2 protein, human

Identifiers

PMID26228655
PMCPMC4520281
OpenAlexW1701645073

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.