Evidence map›Paper›PMID 26227816›Full record

ArticleGenome biology and evolution2015

The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology.

Martijn F L Derks, Sandra Smit, Lucia Salis, Elio Schijlen, Alex Bossers, Christa Mateman, Agata S Pijl, Dick de Ridder, Martien A M Groenen, Marcel E Visser and 1 more

Abstract read
In one paragraph

Article in Genome biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Article
  3. The genome sequence of the Sandy Carpet moth,Wellcome open research · 2025
    Article
  4. The T2T Genome of the Domesticated SilkwormInternational journal of molecular sciences · 2024
    Article
  5. The genome sequence of the March moth,Wellcome open research · 2024
    Article
  6. Tracking Adaptive Pathways of Invasive Insects: Novel Insight from Genomics.International journal of molecular sciences · 2023
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. The Circadian Clock in Lepidoptera.Frontiers in physiology · 2021
    Review
  16. Article
  17. The Wolbachia Symbiont: Here, There and Everywhere.Results and problems in cell differentiation · 2020
    Article
  18. Article
  19. Identification of winter moth (Ecology and evolution · 2019
    Article
  20. Complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Martijn F L DerksBioinformatics Group, Wageningen University, Wageningen, The Netherlands Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
Sandra SmitBioinformatics Group, Wageningen University, Wageningen, The Netherlands sandra.smit@wur.nl.
Lucia SalisDepartment of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands Research Unit Chronobiology, University of Groningen, Groningen, The Netherlands.
Elio SchijlenPRI Bioscience, Plant Research International, Wageningen UR, Wageningen, The Netherlands.
Alex BossersDepartment of Infection Biology, Central Veterinary Institute, Wageningen UR, Lelystad, The Netherlands.
Christa MatemanDepartment of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
Agata S PijlDepartment of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
Dick de RidderBioinformatics Group, Wageningen University, Wageningen, The Netherlands.
Martien A M GroenenAnimal Breeding and Genomics Centre, Wageningen University, Wageningen, The Netherlands.
Marcel E VisserDepartment of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands Animal Breeding and Genomics Centre, Wageningen University, Wageningen, The Netherlands.
Hendrik-Jan MegensAnimal Breeding and Genomics Centre, Wageningen University, Wageningen, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The winter moth (Operophtera brumata) belongs to one of the most species-rich families in Lepidoptera, the Geometridae (approximately 23,000 species). This family is of great economic importance as most species are herbivorous and capable of defoliating trees. Genome assembly of the winter moth allows the study of genes and gene families, such as the cytochrome P450 gene family, which is known to be vital in plant secondary metabolite detoxification and host-plant selection. It also enables exploration of the genomic basis for female brachyptery (wing reduction), a feature of sexual dimorphism in winter moth, and for seasonal timing, a trait extensively studied in this species. Here we present a reference genome for the winter moth, the first geometrid and largest sequenced Lepidopteran genome to date (638 Mb) including a set of 16,912 predicted protein-coding genes. This allowed us to assess the dynamics of evolution on a genome-wide scale using the P450 gene family. We also identified an expanded gene family potentially linked to female brachyptery, and annotated the genes involved in the circadian clock mechanism as main candidates for involvement in seasonal timing. The genome will contribute to Lepidopteran genomic resources and comparative genomics. In addition, the genome enhances our ability to understand the genetic and molecular basis of insect seasonal timing and thereby provides a reference for future evolutionary and population studies on the winter moth.

Indexed as

Genome, InsectSex CharacteristicsAnimalsCircadian ClocksCytochrome P-450 Enzyme SystemGenomicsHumansMaleMolecular Sequence DataMothsSeasonsCytochrome P-450 Enzyme Systemcircadian clockcytochrome P450Lepidopteraphenologysexual dimorphismwinter moth

Identifiers

PMID26227816
PMCPMC4558862

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.