Evidence map›Paper›PMID 26226137›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2016

Comprehensive analysis via exome sequencing uncovers genetic etiology in autosomal recessive nonsyndromic deafness in a large multiethnic cohort.

Guney Bademci, Joseph Foster, Nejat Mahdieh, Mortaza Bonyadi, Duygu Duman, F Basak Cengiz, Ibis Menendez, Oscar Diaz-Horta, Atefeh Shirkavand, Sirous Zeinali and 21 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 95 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed, 2 pooled it
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 2 syntheses or guidelines pooled it, 158 citations in OpenAlex.

  1. Pooled it
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  6. IsMedComm · 2025
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  10. [Late-onset hereditary hearing loss caused byLin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2024
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35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

31 authors at 13 institutions in 4 countries.

Guney BademciDr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida, USA.
Joseph FosterDr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida, USA.
Nejat MahdiehRajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran.
Mortaza BonyadiFaculty of Natural Sciences, Center of Excellence for Biodiversity, University of Tabriz, Tabriz, Iran.
Duygu DumanDivision of Genetics, Department of Pediatrics, Ankara University School of Medicine, Ankara, Turkey.ORCID http://orcid.org/0000-0001-7583-0349
F Basak CengizDivision of Genetics, Department of Pediatrics, Ankara University School of Medicine, Ankara, Turkey.
Ibis MenendezDr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida, USA.
Oscar Diaz-HortaDr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida, USA.
Atefeh ShirkavandKawsar's Human Genetic Research Center, Tehran, Iran.
Sirous ZeinaliKawsar's Human Genetic Research Center, Tehran, Iran.
Asli SubasiogluDepartment of Medical Genetics, Izmir Katip Celebi University, Ataturk Training and Research Hospital, Izmir, Turkey.
Suna Tokgoz-YilmazDepartment of Audiology, Hacettepe University Health Sciences Faculty, Ankara, Turkey.ORCID http://orcid.org/0000-0002-4656-099X
Fabiola Huesca-HernandezGenetic Service, National Institute of Rehabilitation, Mexico D.F., Mexico.
Maria de la Luz Arenas-SordoGenetic Service, National Institute of Rehabilitation, Mexico D.F., Mexico.
Juan Dominguez-AburtoGenetic Service, National Institute of Rehabilitation, Mexico D.F., Mexico.
Edgar Hernandez-ZamoraGenetic Service, National Institute of Rehabilitation, Mexico D.F., Mexico.
Paola MontenegroMolecular Genetic Lab, FFAA Hospital, Quito, Ecuador.
Rosario ParedesMolecular Genetic Lab, FFAA Hospital, Quito, Ecuador.
Germania MoretaMolecular Genetic Lab, FFAA Hospital, Quito, Ecuador.
Rodrigo VinuezaMolecular Genetic Lab, FFAA Hospital, Quito, Ecuador.ORCID http://orcid.org/0000-0001-5254-3072
Franklin VillegasMolecular Genetic Lab, FFAA Hospital, Quito, Ecuador.ORCID http://orcid.org/0000-0001-7188-5967
Santiago Mendoza-BenitezAudiology Department, Cuernavaca General Hospital, Morelos, Mexico.
Shengru GuoDr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida, USA.
Nazim BozanDepartment of Otolaryngology, Faculty of Medicine, Yuzuncu Yıl University, Van, Turkey.
Tulay TosDepartment of Medical Genetics, Dr. Sami Ulus Research and Training Hospital of Women's and Children's Health and Diseases, Ankara, Turkey.
Armagan IncesuluDepartment of Otolaryngology, Head and Neck Surgery, Eskisehir Osmangazi University, Eskisehir, Turkey.
Gonca SennarogluDepartment of Audiology, Hacettepe University Health Sciences Faculty, Ankara, Turkey.
Susan H BlantonDr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida, USA.
Hatice Ozturkmen-AkayDepartment of Radiology, Istanbul Zeynep Kamil Maternity and Children Training and Research Hospital, Istanbul, Turkey.
Muzeyyen Yildirim-BaylanDepartment of Otorhinolaryngology, Dicle University School of Medicine, Diyarbakir, Turkey.
Mustafa TekinDr. John T. Macdonald Foundation Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida, USA.
University of Miami · USInstituto Nacional de Rehabilitación · MXAnkara University · TRHacettepe University · TRDicle University · TREskişehir Osmangazi University · TRIran University of Medical Sciences · IRIzmir Kâtip Çelebi University · TRMinistry of Health · TRPasteur Institute of Iran · IRUniversity of Tabriz · IRVan Yüzüncü Yıl Üniversitesi · TRZeynep Kamil Hospital · TR

Funding

A Collaborative Search for New Genes for Non-Syndromic DeafnessR01DC009645 · NIDCD · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MUSTAFA TEKIN · 2010 to 2026
$11.8M
NIDCD NIH HHS R01 DC009645NIDCD NIH HHS R01DC009645
6 · The paper itself

Abstract

purposeAutosomal recessive nonsyndromic deafness (ARNSD) is characterized by a high degree of genetic heterogeneity, with reported mutations in 58 different genes. This study was designed to detect deafness-causing variants in a multiethnic cohort with ARNSD by using whole-exome sequencing (WES).

methodsAfter excluding mutations in the most common gene, GJB2, we performed WES in 160 multiplex families with ARNSD from Turkey, Iran, Mexico, Ecuador, and Puerto Rico to screen for mutations in all known ARNSD genes.

resultsWe detected ARNSD-causing variants in 90 (56%) families, 54% of which had not been previously reported. Identified mutations were located in 31 known ARNSD genes. The most common genes with mutations were MYO15A (13%), MYO7A (11%), SLC26A4 (10%), TMPRSS3 (9%), TMC1 (8%), ILDR1 (6%), and CDH23 (4%). Nine mutations were detected in multiple families with shared haplotypes, suggesting founder effects.

conclusionWe report on a large multiethnic cohort with ARNSD in which comprehensive analysis of all known ARNSD genes identifies causative DNA variants in 56% of the families. In the remaining families, WES allows us to search for causative variants in novel genes, thus improving our ability to explain the underlying etiology in more families.Genet Med 18 4, 364-371.

Indexed as

ExomeGenes, RecessiveHigh-Throughput Nucleotide SequencingAllelesCohort StudiesDeafnessEthnicityGenotypeHearing Loss, SensorineuralHumansMutation

Identifiers

PMID26226137
PMCPMC4733433
OpenAlexW2268480090

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.