Evidence map›Paper›PMID 26225561›Full record

ArticlePloS one2015

Efficient fdCas9 Synthetic Endonuclease with Improved Specificity for Precise Genome Engineering.

Mustapha Aouida, Ayman Eid, Zahir Ali, Thomas Cradick, Ciaran Lee, Harshavardhan Deshmukh, Ahmed Atef, Dina AbuSamra, Samah Zeineb Gadhoum, Jasmeen Merzaban and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 51 citations in OpenAlex.

  1. CRISPR and the Future of Cardiac Disease Therapy: A New Genetic Frontier.International journal of molecular sciences · 2026
    Review
  2. Article
  3. Review
  4. Review
  5. CRISPR/Cas9 Landscape: Current State and Future Perspectives.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
  8. Genome Editing and Designer Crops for the Future.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Virus-Mediated Genome Editing in Plants Using the CRISPR/Cas9 System.Methods in molecular biology (Clifton, N.J.) · 2019
    Article
  14. Article
  15. Article
  16. Applications of Alternative Nucleases in the Age of CRISPR/Cas9.International journal of molecular sciences · 2017
    Review
  17. Article
  18. CRISPR-Cas orthologues and variants: optimizing the repertoire, specificity and delivery of genome engineering tools.Mammalian genome : official journal of the International Mammalian Genome Society · 2017
    Review
  19. Article
  20. Biasing genome-editing events toward precise length deletions with an RNA-guided TevCas9 dual nuclease.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Mustapha AouidaLaboratory for Genome Engineering, Division of Biological Sciences & Center for Desert Agriculture, 4700 King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Ayman EidLaboratory for Genome Engineering, Division of Biological Sciences & Center for Desert Agriculture, 4700 King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Zahir AliLaboratory for Genome Engineering, Division of Biological Sciences & Center for Desert Agriculture, 4700 King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Thomas CradickDepartment of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, 30332, United States of America.
Ciaran LeeDepartment of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, 30332, United States of America.
Harshavardhan DeshmukhDepartment of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, 30332, United States of America.
Ahmed AtefLaboratory for Genome Engineering, Division of Biological Sciences & Center for Desert Agriculture, 4700 King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Dina AbuSamraLaboratory of Cell Signaling and Migration, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia.
Samah Zeineb GadhoumLaboratory of Cell Signaling and Migration, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia.
Jasmeen MerzabanLaboratory of Cell Signaling and Migration, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia.
Gang BaoDepartment of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, 30332, United States of America.
Magdy MahfouzLaboratory for Genome Engineering, Division of Biological Sciences & Center for Desert Agriculture, 4700 King Abdullah University of Science and Technology, Thuwal, 23955-6900, Kingdom of Saudi Arabia.
King Abdullah University of Science and Technology · SAEmory University · USGeorgia Institute of Technology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Cas9 endonuclease is used for genome editing applications in diverse eukaryotic species. A high frequency of off-target activity has been reported in many cell types, limiting its applications to genome engineering, especially in genomic medicine. Here, we generated a synthetic chimeric protein between the catalytic domain of the FokI endonuclease and the catalytically inactive Cas9 protein (fdCas9). A pair of guide RNAs (gRNAs) that bind to sense and antisense strands with a defined spacer sequence range can be used to form a catalytically active dimeric fdCas9 protein and generate double-strand breaks (DSBs) within the spacer sequence. Our data demonstrate an improved catalytic activity of the fdCas9 endonuclease, with a spacer range of 15-39 nucleotides, on surrogate reporters and genomic targets. Furthermore, we observed no detectable fdCas9 activity at known Cas9 off-target sites. Taken together, our data suggest that the fdCas9 endonuclease variant is a superior platform for genome editing applications in eukaryotic systems including mammalian cells.

Indexed as

CRISPR-Cas SystemsBase SequenceDeoxyribonucleases, Type II Site-SpecificDNA End-Joining RepairEndonucleasesGenetic EngineeringHEK293 CellsHumansMolecular Sequence DataProtein EngineeringRecombinant Fusion ProteinsRNA EditingRNA, Guide, CRISPR-Cas SystemsSubstrate SpecificityDeoxyribonucleases, Type II Site-Specificendodeoxyribonuclease FokIEndonucleasesRecombinant Fusion ProteinsRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID26225561
PMCPMC4520497
OpenAlexW2115495815

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.