ArticleScientific reports2015
First mitochondrial genome for the red crab (Charybdis feriata) with implication of phylogenomics and population genetics.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
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- In silico prospecting of the mtDNA of Macrobrachium amazonicum from transcriptome data.BMC genomics · 2023Article
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- The complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2022Article
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- Phylogenetic relations and mitogenome-wide similarity metrics reveal monophyly ofEcology and evolution · 2021Article
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- The mitochondrial genome of UK (non-native)Hydrobiologia · 2020Article
- Sequencing and Characterization of Mitochondrial Protein-Coding Genes forBioMed research international · 2020Article
- The complete mitochondrial genome and phylogenetic analysis ofMitochondrial DNA. Part B, Resources · 2019Article
- The complete mitochondrial genome and phylogenetic analysis ofMitochondrial DNA. Part B, Resources · 2019Article
- The whole mitochondrial genome and phylogenetic analysis ofMitochondrial DNA. Part B, Resources · 2018Article
- Characterization of the complete mitochondrial genome sequence ofMitochondrial DNA. Part B, Resources · 2018Article
- Characterization of complete mitochondrial genome of two-spot swimming crabMitochondrial DNA. Part B, Resources · 2018Article
- Cryptic species in a well-known habitat: applying taxonomics to the amphipod genus Epimeria (Crustacea, Peracarida).Scientific reports · 2018Article
- Characterization of the complete mitochondrial genome of Xanthid crab,Mitochondrial DNA. Part B, Resources · 2018Article
- The whole mitochondrial genome of the mangrove crab,Mitochondrial DNA. Part B, Resources · 2018Article
- Identification of the complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2018Article
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10 authors.
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Abstract
In this study, we first described the complete mitochondrial genome for the red crab (Charybdis feriata), elucidated its phylogenetic relationship among 20 species within Decapoda, and estimated the population genetic diversity. The mitochondrial genome was 15,660 bp in size and encoded 13 protein-coding genes, 22 transfer RNA (tRNA) genes, and two ribosomal RNA genes. The gene arrangement of the mitochondrial genome was the same as that of its sister species, C. japonica. Phylogenomic analysis suggested that genus Charybdis should be classified into subfamily Portuninae but not into subfamily Thalamitinae. Moreover, a total of 33 haplotypes of complete cytochrome c oxidase subunit I gene were defined in 70 individuals of C. feriata derived from three localities. Haplotype diversity and nucleotide diversity values among three localities indicated a high level of genetic diversity in C. feriata. AMOVA analysis suggested a low level of genetic differentiation among the three localities (FST = 0.0023, P > 0.05). Neutrality tests and mismatch analysis revealed that C. feriata might have undergone a population expansion event that possibly occurred in the last 61,498 to 43,814 years. This study should be helpful to better understand the evolutionary status, and population genetic diversity of C. feriata and related species.
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