Evidence map›Paper›PMID 26225466›Full record

ArticleBiochemistry2015

Metal Stabilization of Collagen and de Novo Designed Mimetic Peptides.

Avanish S Parmar, Fei Xu, Douglas H Pike, Sandeep V Belure, Nida F Hasan, Kathryn E Drzewiecki, David I Shreiber, Vikas Nanda

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 26 citations in OpenAlex.

  1. Antibiotics (Basel, Switzerland) · 2025
    Article
  2. Article
  3. Article
  4. Review
  5. Reversible Covalent End-Capping of Collagen Model Peptides.Chemistry (Weinheim an der Bergstrasse, Germany) · 2019
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Avanish S Parmar
Fei Xu
Douglas H Pike
Sandeep V Belure
Nida F Hasan
Kathryn E Drzewiecki
David I Shreiber
Vikas Nanda
University of Hyderabad · IN

Funding

UMDNJ TRAINING GRANT IN BIOTECHNOLOGYT32GM008339 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI YARMUSH, MARTIN L · 1989 to 2019
$6.1M
Computational Design of a Synthetic Extracellular MatrixDP2OD006478 · OD · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI NANDA, VIKAS · 2009 to 2009
$2.3M
A Computational Approach to Developing Heterochiral Peptide TherapeuticsR01GM089949 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI NANDA, VIKAS · 2010 to 2014
$1.5M
NIGMS NIH HHS 5T32GM008339-20NIGMS NIH HHS R01-GM-08994-01NIGMS NIH HHS R01 GM089949NIH HHS DP2 OD006478
6 · The paper itself

Abstract

We explore the design of metal binding sites to modulate triple-helix stability of collagen and collagen-mimetic peptides. Globular proteins commonly utilize metals to connect tertiary structural elements that are well separated in sequence, constraining structure and enhancing stability. It is more challenging to engineer structural metals into fibrous protein scaffolds, which lack the extensive tertiary contacts seen in globular proteins. In the collagen triple helix, the structural adjacency of the carboxy-termini of the three chains makes this region an attractive target for introducing metal binding sites. We engineered His3 sites based on structural modeling constraints into a series of designed homotrimeric and heterotrimeric peptides, assessing the capacity of metal binding to improve stability and in the case of heterotrimers, affect specificity of assembly. Notable enhancements in stability for both homo- and heteromeric systems were observed upon addition of zinc(II) and several other metal ions only when all three histidine ligands were present. Metal binding affinities were consistent with the expected Irving-Williams series for imidazole. Unlike other metals tested, copper(II) also bound to peptides lacking histidine ligands. Acetylation of the peptide N-termini prevented copper binding, indicating proline backbone amide metal-coordination at this site. Copper similarly stabilized animal extracted Type I collagen in a metal-specific fashion, highlighting the potential importance of metal homeostasis within the extracellular matrix.

Indexed as

Molecular MimicryAmino Acid SequenceAnimalsCattleCollagen Type ICopperMetalloproteinsMetalsModels, MolecularMolecular Sequence DataPeptidesProtein EngineeringProtein StabilityProtein Structure, QuaternaryProtein Structure, TertiaryCollagen Type ICopperMetalloproteinsMetalsPeptides

Identifiers

PMID26225466
PMCPMC5335877
OpenAlexW2463209921

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.