ArticleCPT: pharmacometrics & systems pharmacology2015
BioModels: Content, Features, Functionality, and Use.
Article in CPT: pharmacometrics & systems pharmacology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
36 citing papers in PubMed.
- BioModelsRAG: A Biological Modeling Assistant Using RAG (Retrieval Augmented Generation).ArXiv · 2026Article
- A scoping review of mathematical modeling techniques for gingival keratinization: A framework for periodontal research.Journal of clinical and experimental dentistry · 2025Review
- Multi-scale models of whole cells: progress and challenges.Frontiers in cell and developmental biology · 2023Review
- Article
- Potential inhibitors of the main protease of SARS-CoV-2 and modulators of arachidonic acid pathway: Non-steroidal anti-inflammatory drugs against COVID-19.Computers in biology and medicine · 2021Article
- Mathematical Modelling in Biomedicine: A Primer for the Curious and the Skeptic.International journal of molecular sciences · 2021Review
- A systems approach to infectious disease.Nature reviews. Genetics · 2020Review
- Multi-domain semantic similarity in biomedical research.BMC bioinformatics · 2019Article
- System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris.BMC bioinformatics · 2019Article
- Recent Advances in the Systems Biology of Aging.Antioxidants & redox signaling · 2018Review
- Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenes 130Z.BMC systems biology · 2018Article
- A Digitally Programmable Cytomorphic Chip for Simulation of Arbitrary Biochemical Reaction Networks.IEEE transactions on biomedical circuits and systems · 2018Article
- Identifying frequent patterns in biochemical reaction networks: a workflow.Database : the journal of biological databases and curation · 2018Article
- Responses to auxin signals: an operating principle for dynamical sensitivity yet high resilience.Royal Society open science · 2018Article
- MAGPIE: Simplifying access and execution of computational models in the life sciences.PLoS computational biology · 2017Article
- From word models to executable models of signaling networks using automated assembly.Molecular systems biology · 2017Article
- The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes.Journal of biomedical semantics · 2017Article
- Article
- Metabolic modeling of energy balances in Mycoplasma hyopneumoniae shows that pyruvate addition increases growth rate.Biotechnology and bioengineering · 2017Article
- PharmML in Action: an Interoperable Language for Modeling and Simulation.CPT: pharmacometrics & systems pharmacology · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
11 authors.
Funding
Abstract
BioModels is a reference repository hosting mathematical models that describe the dynamic interactions of biological components at various scales. The resource provides access to over 1,200 models described in literature and over 140,000 models automatically generated from pathway resources. Most model components are cross-linked with external resources to facilitate interoperability. A large proportion of models are manually curated to ensure reproducibility of simulation results. This tutorial presents BioModels' content, features, functionality, and usage.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.