Evidence map›Paper›PMID 26224804›Full record

ArticlePlant physiology2015

A Single Amino Acid Substitution in an ORANGE Protein Promotes Carotenoid Overaccumulation in Arabidopsis.

Hui Yuan, Katherine Owsiany, T E Sheeja, Xiangjun Zhou, Caroline Rodriguez, Yongxi Li, Ralf Welsch, Noam Chayut, Yong Yang, Theodore W Thannhauser and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 109 citations in OpenAlex.

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  18. Metabolic Engineering of Crocin Biosynthesis inFrontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 5 countries.

Hui YuanRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Katherine OwsianyRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
T E SheejaRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Xiangjun ZhouRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Caroline RodriguezRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Yongxi LiRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Ralf WelschRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Noam ChayutRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Yong YangRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Theodore W ThannhauserRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Mandayam V ParthasarathyRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Qiang XuRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Xiuxin DengRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Zhangjun FeiRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Ari SchafferRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Nurit KatzirRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Joseph BurgerRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Yaakov TadmorRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.).
Li LiRobert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture-Agricultural Research Service (H.Y., X.Z., Y.Y., T.W.T., L.L.), Plant Breeding and Genetics Section, School of Integrative Plant Science (H.Y., K.O., T.E.S., X.Z., C.R., L.L.), Plant Biology Section, School of Integrative Plant Science (M.V.P.), and Boyce Thompson Institute for Plant Research (Z.F.), Cornell University, Ithaca, New York 14853;Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People's Republic of China (Y.L., Q.X., X.D.);University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany (R.W.); andNewe Ya'ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel (N.C., A.S., N.K., J.B., Y.T.) ll37@cornell.edu.
Agricultural Research Organization · ILRobert W. Holley Center for Agriculture & Health · USHuazhong Agricultural University · CNInstitute of Plant Genetics, Polish Academy of Sciences · PLCornell University · USUniversity of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carotenoids are crucial for plant growth and human health. The finding of ORANGE (OR) protein as a pivotal regulator of carotenogenesis offers a unique opportunity to comprehensively understand the regulatory mechanisms of carotenoid accumulation and develop crops with enhanced nutritional quality. Here, we demonstrated that alteration of a single amino acid in a wild-type OR greatly enhanced its ability to promote carotenoid accumulation. Whereas overexpression of OR from Arabidopsis (Arabidopsis thaliana; AtOR) or from the agronomically important crop sorghum (Sorghum bicolor; SbOR) increased carotenoid levels up to 2-fold, expression of AtOR(His) (R90H) or SbOR(His) (R104H) variants dramatically enhanced carotenoid accumulation by up to 7-fold in the Arabidopsis calli. Moreover, we found that AtOR(Ala) (R90A) functioned similarly to AtOR(His) to promote carotenoid overproduction. Neither AtOR nor AtOR(His) greatly affected carotenogenic gene expression. AtOR(His) exhibited similar interactions with phytoene synthase (PSY) as AtOR in posttranscriptionally regulating PSY protein abundance. AtOR(His) triggered biogenesis of membranous chromoplasts in the Arabidopsis calli, which shared structures similar to chromoplasts found in the curd of the orange cauliflower (Brassica oleracea) mutant. By contrast, AtOR did not cause plastid-type changes in comparison with the controls, but produced plastids containing larger and electron-dense plastoglobuli. The unique ability of AtOR(His) in mediating chromoplast biogenesis is responsible for its induced carotenoid overproduction. Our study demonstrates OR(His/Ala) as powerful tools for carotenoid enrichment in plants, and provides insights into the mechanisms underlying OR(His)-regulated carotenoid accumulation.

Indexed as

Amino Acid SubstitutionAmino Acid SequenceArabidopsisArabidopsis ProteinsBiosynthetic PathwaysCarotenoidsGene Expression Regulation, PlantHSP40 Heat-Shock ProteinsMolecular Sequence DataPlants, Genetically ModifiedPlastidsProtein TransportSequence AlignmentArabidopsis ProteinsCarotenoidsHSP40 Heat-Shock ProteinsORANGE protein, Arabidopsis

Identifiers

PMID26224804
PMCPMC4577434
OpenAlexW2129891953

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