Evidence map›Paper›PMID 26223880›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2015

Publishing and sharing multi-dimensional image data with OMERO.

Jean-Marie Burel, Sébastien Besson, Colin Blackburn, Mark Carroll, Richard K Ferguson, Helen Flynn, Kenneth Gillen, Roger Leigh, Simon Li, Dominik Lindner and 9 more

Abstract read
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. PixelDeck: A local-first media library manager for biomedical imaging.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. SLBP-independent control of maternal histone mRNA.bioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Jean-Marie BurelCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Sébastien BessonCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Colin BlackburnCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Mark CarrollCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Richard K FergusonCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Helen FlynnCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Kenneth GillenCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Roger LeighCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Simon LiCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Dominik LindnerCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Melissa LinkertGlencoe Software, Inc., Seattle, WA, USA.
William J MooreCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Balaji RamalingamCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Emil RozbickiGlencoe Software, Inc., Seattle, WA, USA.
Aleksandra TarkowskaCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Petr WalczyskoCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Chris AllanGlencoe Software, Inc., Seattle, WA, USA.
Josh MooreCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK.
Jason R SwedlowCentre for Gene Regulation & Expression, University of Dundee, Dundee, Scotland, UK. jrswedlow@dundee.ac.uk.ORCID http://orcid.org/0000-0002-2198-1958

Funding

Biotechnology and Biological Sciences Research Council BB/L024233/1Biotechnology and Biological Sciences Research Council BB/M018423/1Wellcome Trust 095931Wellcome Trust 095931/Z/11/ZWellcome Trust 097945
6 · The paper itself

Abstract

Imaging data are used in the life and biomedical sciences to measure the molecular and structural composition and dynamics of cells, tissues, and organisms. Datasets range in size from megabytes to terabytes and usually contain a combination of binary pixel data and metadata that describe the acquisition process and any derived results. The OMERO image data management platform allows users to securely share image datasets according to specific permissions levels: data can be held privately, shared with a set of colleagues, or made available via a public URL. Users control access by assigning data to specific Groups with defined membership and access rights. OMERO's Permission system supports simple data sharing in a lab, collaborative data analysis, and even teaching environments. OMERO software is open source and released by the OME Consortium at www.openmicroscopy.org.

Indexed as

Information DisseminationMolecular ImagingSoftwareAnimalsInternetPublishing

Identifiers

PMID26223880
PMCPMC4602067

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.