Evidence map›Paper›PMID 26222960›Full record

ArticleJournal of biomedical optics2015

Blind deconvolution estimation of fluorescence measurements through quadratic programming.

Daniel U Campos-Delgado, Omar Gutierrez-Navarro, Edgar R Arce-Santana, Melissa C Skala, Alex J Walsh, Javier A Jo

Open access · bronzeAbstract read
In one paragraph

Article in Journal of biomedical optics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Extended Blind End-member and Abundance Extraction for Biomedical Imaging Applications.IEEE access : practical innovations, open solutions · 2019
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Daniel U Campos-DelgadoUniversidad Autonoma de San Luis Potosi, Facultad de Ciencias, San Luis Potosi C.P 78290, Mexico.
Omar Gutierrez-NavarroUniversidad Autonoma de San Luis Potosi, Facultad de Ciencias, San Luis Potosi C.P 78290, Mexico.
Edgar R Arce-SantanaUniversidad Autonoma de San Luis Potosi, Facultad de Ciencias, San Luis Potosi C.P 78290, Mexico.
Melissa C SkalaVanderbilt University, Department of Biomedical Engineering, Nashville, Tennessee, United States.
Alex J WalshVanderbilt University, Department of Biomedical Engineering, Nashville, Tennessee, United States.
Javier A JoTexas A&M University, Department of Biomedical Engineering, College Station, Texas, United States.
Autonomous University of San Luis Potosí · MXVanderbilt University · USTexas A&M University · US

Funding

Morphological and Molecular Imaging System for in vivo Atherosclerosis ResearchR01HL111361 · NHLBI · TEXAS ENGINEERING EXPERIMENT STATION · PI APPLEGATE, BRIAN E. · 2012 to 2016
$1.7M
Cellular-level Optical Metabolic Imaging to Predict Drug Response in CancerR01CA185747 · NCI · VANDERBILT UNIVERSITY · PI SKALA, MELISSA CAROLINE · 2014 to 2019
$1.6M
Multiresolution FLIM and Reflectance Confocal Microscopy to Detect DysplasiaR01CA138653 · NCI · TEXAS ENGINEERING EXPERIMENT STATION · PI MAITLAND, KRISTEN C. · 2010 to 2014
$1.5M
Combined OCT/FLIM Biochemical and Anatomical Imaging for Early Cancer DiagnosisR21CA132433 · NCI · TEXAS ENGINEERING EXPERIMENT STATION · PI JO, JAVIER ANTONIO · 2008 to 2009
$668k
Structured illumination multispectral fluorescence lifetime microendoscopy to detect oral premalignanciesR03CA191860 · NCI · TEXAS ENGINEERING EXPERIMENT STATION · PI MALIK, BILAL · 2015 to 2016
$140k
NCI NIH HHS 1R21CA132433NCI NIH HHS R01 CA138653NCI NIH HHS R01 CA185747NCI NIH HHS R03 CA191860NHLBI NIH HHS 1R01HL11136NHLBI NIH HHS R01 HL111361
6 · The paper itself

Abstract

Time-deconvolution of the instrument response from fluorescence lifetime imaging microscopy (FLIM) data is usually necessary for accurate fluorescence lifetime estimation. In many applications, however, the instrument response is not available. In such cases, a blind deconvolution approach is required. An iterative methodology is proposed to address the blind deconvolution problem departing from a dataset of FLIM measurements. A linear combination of a base conformed by Laguerre functions models the fluorescence impulse response of the sample at each spatial point in our formulation. Our blind deconvolution estimation (BDE) algorithm is formulated as a quadratic approximation problem, where the decision variables are the samples of the instrument response and the scaling coefficients of the basis functions. In the approximation cost function, there is a bilinear dependence on the decision variables. Hence, due to the nonlinear nature of the estimation process, an alternating least-squares scheme iteratively solves the approximation problem. Our proposal searches for the samples of the instrument response with a global perspective, and the scaling coefficients of the basis functions locally at each spatial point. First, the iterative methodology relies on a least-squares solution for the instrument response, and quadratic programming for the scaling coefficients applied just to a subset of the measured fluorescence decays to initially estimate the instrument response to speed up the convergence. After convergence, the final stage computes the fluorescence impulse response at all spatial points. A comprehensive validation stage considers synthetic and experimental FLIM datasets of ex vivo atherosclerotic plaques and human breast cancer cell samples that highlight the advantages of the proposed BDE algorithm under different noise and initial conditions in the iterative scheme and parameters of the proposal.

Indexed as

AlgorithmsCell Line, TumorHumansImage Processing, Computer-AssistedMicroscopy, FluorescenceModels, BiologicalPlaque, Atherosclerotic

Identifiers

PMID26222960
PMCPMC5998001
OpenAlexW1942813193

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.