Evidence map›Paper›PMID 26221972›Full record

ArticleImmunology2015

A polymorphism in a phosphotyrosine signalling motif of CD229 (Ly9, SLAMF3) alters SH2 domain binding and T-cell activation.

Stefanie Margraf, Lee I Garner, Timothy J Wilson, Marion H Brown

Open access · hybridAbstract read
In one paragraph

Article in Immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Systematic Multiomic Analysis ofInternational journal of molecular sciences · 2023
    Article
  4. Review
  5. Review
  6. Article
  7. SLE-Associated Defects Promote Altered T Cell Function.Critical reviews in immunology · 2017
    Review
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Stefanie MargrafSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Lee I GarnerSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Timothy J WilsonSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
Marion H BrownSir William Dunn School of Pathology, University of Oxford, Oxford, UK.
University of Oxford · GB

Funding

Cancer Research UK 13236Cancer Research UK C29938/A13236Medical Research Council G0400808
6 · The paper itself

Abstract

Signalling lymphocyte activation molecule (SLAM) family members regulate activation and inhibition in the innate and adaptive immune systems. Genome-wide association studies identified their genetic locus (1q23) as highly polymorphic and associated with susceptibility to systemic lupus erythematosus (SLE). Here we show that the Val602 variant of the non-synonymous single nucleotide polymorphism (SNP) rs509749 in the SLAM family member CD229 (Ly9, SLAMF3) has a two-fold lower affinity compared with the SLE-associated Met602 variant for the small adaptor protein SAP. Comparison of the two variants in T-cell lines revealed the Val602 variant to be significantly more highly expressed than CD229 Met602 . Activation was diminished in cells expressing CD229 Val602 compared with CD229 Met602 as measured by up-regulation of CD69. There was no correlation between homozygosity at rs509749 and activation in peripheral blood mononuclear cells from healthy donors. These findings identify potential mechanisms by which a single SNP can perturb fine-tuning in the immune system with significant functional consequences.

Indexed as

Polymorphism, Single NucleotideAmino Acid MotifsAmino Acid SubstitutionAntigens, CDAntigens, Differentiation, T-LymphocyteCD3 ComplexCD69 AntigensGenetic Predisposition to DiseaseGenome-Wide Association StudyHEK293 CellsHumansIntracellular Signaling Peptides and ProteinsJurkat CellsLectins, C-TypeLupus Erythematosus, SystemicLymphocyte ActivationAntigens, CDAntigens, Differentiation, T-LymphocyteCD3 ComplexCD69 AntigensIntracellular Signaling Peptides and ProteinsLectins, C-TypeLY9 protein, humanPhosphotyrosineSH2D1A protein, humanSignaling Lymphocytic Activation Molecule Associated ProteinSignaling Lymphocytic Activation Molecule FamilyCD229signallingSLAMsystemic lupus erythematosusT cell

Identifiers

PMID26221972
PMCPMC4610628
OpenAlexW1885950593

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.