Evidence map›Paper›PMID 26221022›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Phytoplankton-bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge.

Erin M Bertrand, John P McCrow, Ahmed Moustafa, Hong Zheng, Jeffrey B McQuaid, Tom O Delmont, Anton F Post, Rachel E Sipler, Jenna L Spackeen, Kai Xu and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
22.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 254 citations in OpenAlex.

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37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 2 countries.

Erin M BertrandMicrobial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037; Integrative Oceanography Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92037;
John P McCrowMicrobial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037;
Ahmed MoustafaMicrobial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037; Integrative Oceanography Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92037; Department of Biology and Biotechnology Graduate Program, American University in Cairo, Cairo, Egypt 11835;
Hong ZhengMicrobial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037;
Jeffrey B McQuaidMicrobial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037; Integrative Oceanography Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92037;
Tom O DelmontJosephine Bay Paul Center, Marine Biological Laboratory, Woods Hole, MA 02543;
Anton F PostGraduate School of Oceanography, University of Rhode Island, Narragansett, RI 02882;
Rachel E SiplerDepartment of Physical Sciences, Virginia Institute of Marine Science, Gloucester Point, VA 23062;
Jenna L SpackeenDepartment of Physical Sciences, Virginia Institute of Marine Science, Gloucester Point, VA 23062;
Kai XuMarine and Environmental Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089.
Deborah A BronkDepartment of Physical Sciences, Virginia Institute of Marine Science, Gloucester Point, VA 23062;
David A HutchinsMarine and Environmental Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089.
Andrew E AllenMicrobial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037; Integrative Oceanography Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92037; aallen@jcvi.org.
J. Craig Venter Institute · USUniversity of Southern California · USVirginia Sea Grant · USAmerican University in Cairo · EGMarine Biological Laboratory · USScripps Institution of Oceanography · USUniversity of California, San Diego · USUniversity of Rhode Island · USVirginia Institute of Marine Science

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Southern Ocean primary productivity plays a key role in global ocean biogeochemistry and climate. At the Southern Ocean sea ice edge in coastal McMurdo Sound, we observed simultaneous cobalamin and iron limitation of surface water phytoplankton communities in late Austral summer. Cobalamin is produced only by bacteria and archaea, suggesting phytoplankton-bacterial interactions must play a role in this limitation. To characterize these interactions and investigate the molecular basis of multiple nutrient limitation, we examined transitions in global gene expression over short time scales, induced by shifts in micronutrient availability. Diatoms, the dominant primary producers, exhibited transcriptional patterns indicative of co-occurring iron and cobalamin deprivation. The major contributor to cobalamin biosynthesis gene expression was a gammaproteobacterial population, Oceanospirillaceae ASP10-02a. This group also contributed significantly to metagenomic cobalamin biosynthesis gene abundance throughout Southern Ocean surface waters. Oceanospirillaceae ASP10-02a displayed elevated expression of organic matter acquisition and cell surface attachment-related genes, consistent with a mutualistic relationship in which they are dependent on phytoplankton growth to fuel cobalamin production. Separate bacterial groups, including Methylophaga, appeared to rely on phytoplankton for carbon and energy sources, but displayed gene expression patterns consistent with iron and cobalamin deprivation. This suggests they also compete with phytoplankton and are important cobalamin consumers. Expression patterns of siderophore- related genes offer evidence for bacterial influences on iron availability as well. The nature and degree of this episodic colimitation appear to be mediated by a series of phytoplankton-bacterial interactions in both positive and negative feedback loops.

Indexed as

EcosystemIce CoverMicrobial InteractionsAntarctic RegionsBacteriaChlorophyllChlorophyll AFeedback, PhysiologicalIronMicronutrientsOpen Reading FramesPhytoplanktonRNA, MessengerStress, PhysiologicalVitamin B 12ChlorophyllChlorophyll AIronMicronutrientsRNA, MessengerVitamin B 12cobalamincolimitationmetatranscriptomicsphytoplankton–bacterial interactionsSouthern Ocean primary productivity

Identifiers

PMID26221022
PMCPMC4538660
OpenAlexW1936330011

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.