Evidence map›Paper›PMID 26220092›Full record

ArticleBMC genomics2015

The Pkn22 Ser/Thr kinase in Nostoc PCC 7120: role of FurA and NtcA regulators and transcript profiling under nitrogen starvation and oxidative stress.

Fan Yingping, Sylvain Lemeille, Andrés González, Véronique Risoul, Yann Denis, Pierre Richaud, Otmane Lamrabet, Maria F Fillat, Cheng-Cai Zhang, Amel Latifi

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. The Pkn22 Kinase ofFrontiers in microbiology · 2019
    Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 4 countries.

Fan YingpingAix-Marseille University and CNRS, Laboratoire de Chimie Bactérienne - UMR7283, IMM, 31 Chemin Joseph Aiguier, 13402, Marseille cedex 20, France. fanyingping@gmail.com.
Sylvain LemeilleDepartment of Microbiology and Molecular Medicine, CMU, Medical Faculty, University of Geneva, Genève, 1211, Switzerland. sylvain.lemeille@hotmail.fr.
Andrés GonzálezDepartamento de Bioquímica y Biología Molecular y Celular, Universidad de Zaragoza, 50009, Zaragoza, Spain. andresglez2005@gmail.com.
Véronique RisoulAix-Marseille University and CNRS, Laboratoire de Chimie Bactérienne - UMR7283, IMM, 31 Chemin Joseph Aiguier, 13402, Marseille cedex 20, France. vrisoul@imm.cnrs.fr.
Yann DenisPlate-forme Transcriptome FR3479, IMM-CNRS, Marseille, France. ydenis@imm.cnrs.fr.
Pierre RichaudCEA, DSV, IBEB, SBVME, Saint-Paul-lez-Durance, F-13108, France. pierre.richaud@cea.fr.
Otmane LamrabetAix-Marseille University and CNRS, Laboratoire de Chimie Bactérienne - UMR7283, IMM, 31 Chemin Joseph Aiguier, 13402, Marseille cedex 20, France. otmanelamrabet@gmail.com.
Maria F FillatDepartamento de Bioquímica y Biología Molecular y Celular, Universidad de Zaragoza, 50009, Zaragoza, Spain. fillat@unizar.es.
Cheng-Cai ZhangAix-Marseille University and CNRS, Laboratoire de Chimie Bactérienne - UMR7283, IMM, 31 Chemin Joseph Aiguier, 13402, Marseille cedex 20, France. cczhang@imm.cnrs.fr.
Amel LatifiAix-Marseille University and CNRS, Laboratoire de Chimie Bactérienne - UMR7283, IMM, 31 Chemin Joseph Aiguier, 13402, Marseille cedex 20, France. latifi@imm.cnrs.fr.
Centre National de la Recherche Scientifique · FRUniversidad de Zaragoza · ESUniversity of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe filamentous cyanobacterium Nostoc sp. strain PCC 7120 can fix N2 when combined nitrogen is not available. Furthermore, it has to cope with reactive oxygen species generated as byproducts of photosynthesis and respiration. We have previously demonstrated the synthesis of Ser/Thr kinase Pkn22 as an important survival response of Nostoc to oxidative damage. In this study we wished to investigate the possible involvement of this kinase in signalling peroxide stress and nitrogen deprivation.

resultsQuantitative RT-PCR experiments revealed that the pkn22 gene is induced in response to peroxide stress and to combined nitrogen starvation. Electrophoretic motility assays indicated that the pkn22 promoter is recognized by the global transcriptional regulators FurA and NtcA. Transcriptomic analysis comparing a pkn22-insertion mutant and the wild type strain indicated that this kinase regulates genes involved in important cellular functions such as photosynthesis, carbon metabolism and iron acquisition. Since metabolic changes may lead to oxidative stress, we investigated whether this is the case with nitrogen starvation. Our results rather invalidate this hypothesis thereby suggesting that the function of Pkn22 under nitrogen starvation is independent of its role in response to peroxide stress.

conclusionsOur analyses have permitted a more complete functional description of Ser/Thr kinase in Nostoc. We have decrypted the transcriptional regulation of the pkn22 gene, and analysed the whole set of genes under the control of this kinase in response to the two environmental changes often encountered by cyanobacteria in their natural habitat: oxidative stress and nitrogen deprivation.

Indexed as

Bacterial ProteinsBase SequenceCarbonGene Expression ProfilingHydrogen PeroxideIronMolecular Sequence DataNitrogenNostocOligonucleotide Array Sequence AnalysisOxidative StressPhotosynthesisPromoter Regions, GeneticProtein Serine-Threonine KinasesReal-Time Polymerase Chain ReactionTranscription FactorsBacterial ProteinsCarbonHydrogen PeroxideIronNitrogenProtein Serine-Threonine KinasesTranscription Factors

Identifiers

PMID26220092
PMCPMC4518582
OpenAlexW1950864887

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.