Evidence map›Paper›PMID 26218428›Full record

ArticlePloS one2015

Inactivation of ca10a and ca10b Genes Leads to Abnormal Embryonic Development and Alters Movement Pattern in Zebrafish.

Ashok Aspatwar, Martti E E Tolvanen, Markus J T Ojanen, Harlan R Barker, Anni K Saralahti, Carina A Bäuerlein, Csaba Ortutay, Peiwen Pan, Marianne Kuuslahti, Mataleena Parikka and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Novel Drug Screening Assay forJournal of medicinal chemistry · 2024
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  5. Review
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  7. Article
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  9. Article
  10. Article
  11. Article
  12. Article
  13. Carbonic anhydrase-related protein CA10 is an evolutionarily conserved pan-neurexin ligand.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  14. Expression of Carbonic Anhydrase I in Motor Neurons and Alterations in ALS.International journal of molecular sciences · 2016
    Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Ashok AspatwarBioMediTech, University of Tampere, Tampere, Finland; School of Medicine, University of Tampere, Tampere, Finland.
Martti E E TolvanenBioMediTech, University of Tampere, Tampere, Finland; Department of Information Technology, University of Turku, Turku, Finland.
Markus J T OjanenBioMediTech, University of Tampere, Tampere, Finland.
Harlan R BarkerSchool of Medicine, University of Tampere, Tampere, Finland.
Anni K SaralahtiBioMediTech, University of Tampere, Tampere, Finland.
Carina A BäuerleinBioMediTech, University of Tampere, Tampere, Finland.
Csaba OrtutayBioMediTech, University of Tampere, Tampere, Finland.
Peiwen PanSchool of Medicine, University of Tampere, Tampere, Finland.
Marianne KuuslahtiSchool of Medicine, University of Tampere, Tampere, Finland.
Mataleena ParikkaBioMediTech, University of Tampere, Tampere, Finland.
Mika RämetBioMediTech, University of Tampere, Tampere, Finland; PEDEGO Research Center, and Medical Research Center Oulu, University of Oulu, Oulu, Finland; Department of Children and Adolescents, Oulu University Hospital, Oulu, Finland.
Seppo ParkkilaSchool of Medicine, University of Tampere, Tampere, Finland; Fimlab ltd and Tampere University Hospital, Tampere, Finland.
Tampere University · FITampere University · FIOulu University Hospital · FITampere University Hospital · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carbonic anhydrase related proteins (CARPs) X and XI are highly conserved across species and are predominantly expressed in neural tissues. The biological role of these proteins is still an enigma. Ray-finned fish have lost the CA11 gene, but instead possess two co-orthologs of CA10. We analyzed the expression pattern of zebrafish ca10a and ca10b genes during embryonic development and in different adult tissues, and studied 61 CARP X/XI-like sequences to evaluate their phylogenetic relationship. Sequence analysis of zebrafish ca10a and ca10b reveals strongly predicted signal peptides, N-glycosylation sites, and a potential disulfide, all of which are conserved, suggesting that all of CARP X and XI are secretory proteins and potentially dimeric. RT-qPCR showed that zebrafish ca10a and ca10b genes are expressed in the brain and several other tissues throughout the development of zebrafish. Antisense morpholino mediated knockdown of ca10a and ca10b showed developmental delay with a high rate of mortality in larvae. Zebrafish morphants showed curved body, pericardial edema, and abnormalities in the head and eye, and there was increased apoptotic cell death in the brain region. Swim pattern showed abnormal movement in morphant zebrafish larvae compared to the wild type larvae. The developmental phenotypes of the ca10a and ca10b morphants were confirmed by inactivating these genes with the CRISPR/Cas9 system. In conclusion, we introduce a novel zebrafish model to investigate the mechanisms of CARP Xa and CARP Xb functions. Our data indicate that CARP Xa and CARP Xb have important roles in zebrafish development and suppression of ca10a and ca10b expression in zebrafish larvae leads to a movement disorder.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsApoptosisEmbryonic DevelopmentEmbryo, NonmammalianGene Knockdown TechniquesLarvaMorpholinosOligonucleotides, AntisensePhylogenySwimmingTeratogenesisZebrafishZebrafish ProteinsMorpholinosOligonucleotides, AntisenseZebrafish Proteins

Identifiers

PMID26218428
PMCPMC4539348
OpenAlexW1555338988

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.