Evidence map›Paper›PMID 26218270›Full record

ArticlePLoS genetics2015

Checkpoint Activation of an Unconventional DNA Replication Program in Tetrahymena.

Pamela Y Sandoval, Po-Hsuen Lee, Xiangzhou Meng, Geoffrey M Kapler

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. ORChestra coordinates the replication and repair music.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  3. Article
  4. Transcriptome analysis of the binucleate ciliateMolecular biology of the cell · 2023
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Pamela Y SandovalInterdisciplinary Program in Genetics, Texas A&M University, College Station, Texas, United States of America.
Po-Hsuen LeeDepartment of Molecular and Cellular Medicine, Texas A&M University Health Science Center, College Station, Texas, United States of America.
Xiangzhou MengDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas, United States of America.
Geoffrey M KaplerInterdisciplinary Program in Genetics, Texas A&M University, College Station, Texas, United States of America; Department of Molecular and Cellular Medicine, Texas A&M University Health Science Center, College Station, Texas, United States of America; Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas, United States of America.
Texas A&M University · USTexas A&M Health Science Center · US

Funding

Replication and Amplification of Tetrahymena rDNAR01GM053572 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI KAPLER, GEOFFREY M. · 2002 to 2010
$2.1M
NIGMS NIH HHS R01 GM053572
6 · The paper itself

Abstract

The intra-S phase checkpoint kinase of metazoa and yeast, ATR/MEC1, protects chromosomes from DNA damage and replication stress by phosphorylating subunits of the replicative helicase, MCM2-7. Here we describe an unprecedented ATR-dependent pathway in Tetrahymena thermophila in which the essential pre-replicative complex proteins, Orc1p, Orc2p and Mcm6p are degraded in hydroxyurea-treated S phase cells. Chromosomes undergo global changes during HU-arrest, including phosphorylation of histone H2A.X, deacetylation of histone H3, and an apparent diminution in DNA content that can be blocked by the deacetylase inhibitor sodium butyrate. Most remarkably, the cell cycle rapidly resumes upon hydroxyurea removal, and the entire genome is replicated prior to replenishment of ORC and MCMs. While stalled replication forks are elongated under these conditions, DNA fiber imaging revealed that most replicating molecules are produced by new initiation events. Furthermore, the sole origin in the ribosomal DNA minichromosome is inactive and replication appears to initiate near the rRNA promoter. The collective data raise the possibility that replication initiation occurs by an ORC-independent mechanism during the recovery from HU-induced replication stress.

Indexed as

Ataxia Telangiectasia Mutated ProteinsButyric AcidCell DivisionDNA-Binding ProteinsDNA DamageDNA ReplicationHistone Deacetylase InhibitorsHistonesHydroxyureaOrigin Recognition ComplexPhosphorylationReplication OriginS Phase Cell Cycle CheckpointsTetrahymena thermophilaAtaxia Telangiectasia Mutated ProteinsButyric AcidDNA-Binding ProteinsHistone Deacetylase InhibitorsHistonesHydroxyureaOrigin Recognition Complex

Identifiers

PMID26218270
PMCPMC4517752
OpenAlexW967085994

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.