Evidence map›Paper›PMID 26218224›Full record

ArticleeLife2015

Logics and properties of a genetic regulatory program that drives embryonic muscle development in an echinoderm.

Carmen Andrikou, Chih-Yu Pai, Yi-Hsien Su, Maria Ina Arnone

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 58 citations in OpenAlex.

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  9. Distinct regulatory states control the elongation of individual skeletal rods in the sea urchin embryo.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Carmen AndrikouBiology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Napoli, Italy.
Chih-Yu PaiInstitute of Cellular and Organismic Biology, Academia Sinica, Taipei, Taiwan.
Yi-Hsien SuInstitute of Cellular and Organismic Biology, Academia Sinica, Taipei, Taiwan.
Maria Ina ArnoneBiology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Napoli, Italy.
Institute of Cellular and Organismic Biology, Academia Sinica · TWStazione Zoologica Anton Dohrn · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Evolutionary origin of muscle is a central question when discussing mesoderm evolution. Developmental mechanisms underlying somatic muscle development have mostly been studied in vertebrates and fly where multiple signals and hierarchic genetic regulatory cascades selectively specify myoblasts from a pool of naive mesodermal progenitors. However, due to the increased organismic complexity and distant phylogenetic position of the two systems, a general mechanistic understanding of myogenesis is still lacking. In this study, we propose a gene regulatory network (GRN) model that promotes myogenesis in the sea urchin embryo, an early branching deuterostome. A fibroblast growth factor signaling and four Forkhead transcription factors consist the central part of our model and appear to orchestrate the myogenic process. The topological properties of the network reveal dense gene interwiring and a multilevel transcriptional regulation of conserved and novel myogenic genes. Finally, the comparison of the myogenic network architecture among different animal groups highlights the evolutionary plasticity of developmental GRNs.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsEchinodermataGene Regulatory NetworksModels, BiologicalMuscle DevelopmentTranscription, Geneticdevelopmental biologyevolutionary biologyFGFForkheadgene regulatory networkgenomicsmyogenesissea urchinspecificationstem cells

Identifiers

PMID26218224
PMCPMC4549668
OpenAlexW2166919377

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.