Evidence map›Paper›PMID 26216996›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Enlightening the photoactive site of channelrhodopsin-2 by DNP-enhanced solid-state NMR spectroscopy.

Johanna Becker-Baldus, Christian Bamann, Krishna Saxena, Henrik Gustmann, Lynda J Brown, Richard C D Brown, Christian Reiter, Ernst Bamberg, Josef Wachtveitl, Harald Schwalbe and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Resonant Mixing Dynamic Nuclear Polarization.The journal of physical chemistry letters · 2023
    Article
  8. Article
  9. Article
  10. Solid-State NMR Spectroscopy on Microbial Rhodopsins.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Solid-state NMR spectroscopy.Nature reviews. Methods primers · 2021
    Article
  17. Review
  18. Unifying photocycle model for light adaptation and temporal evolution of cation conductance in channelrhodopsin-2.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Johanna Becker-BaldusInstitute of Biophysical Chemistry, Goethe University Frankfurt, 60438 Frankfurt, Germany; Centre for Biomolecular Magnetic Resonance, Goethe University Frankfurt, 60438 Frankfurt, Germany;
Christian BamannMax-Planck-Institute of Biophysics, 60438 Frankfurt, Germany;
Krishna SaxenaCentre for Biomolecular Magnetic Resonance, Goethe University Frankfurt, 60438 Frankfurt, Germany; Institute of Organic Chemistry and Chemical Biology, Goethe University Frankfurt, 60438 Frankfurt, Germany;
Henrik GustmannInstitute of Physical and Theoretical Chemistry, Goethe University Frankfurt, 60438 Frankfurt, Germany;
Lynda J BrownDepartment of Chemistry, University of Southampton, Southampton SO17 1BJ, United Kingdom;
Richard C D BrownDepartment of Chemistry, University of Southampton, Southampton SO17 1BJ, United Kingdom;
Christian ReiterBruker Biospin GmbH, 76287 Rheinstetten, Germany.
Ernst BambergMax-Planck-Institute of Biophysics, 60438 Frankfurt, Germany;
Josef WachtveitlInstitute of Physical and Theoretical Chemistry, Goethe University Frankfurt, 60438 Frankfurt, Germany;
Harald SchwalbeCentre for Biomolecular Magnetic Resonance, Goethe University Frankfurt, 60438 Frankfurt, Germany; Institute of Organic Chemistry and Chemical Biology, Goethe University Frankfurt, 60438 Frankfurt, Germany;
Clemens GlaubitzInstitute of Biophysical Chemistry, Goethe University Frankfurt, 60438 Frankfurt, Germany; Centre for Biomolecular Magnetic Resonance, Goethe University Frankfurt, 60438 Frankfurt, Germany; glaubitz@em.uni-frankfurt.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Channelrhodopsin-2 from Chlamydomonas reinhardtii is a light-gated ion channel. Over recent years, this ion channel has attracted considerable interest because of its unparalleled role in optogenetic applications. However, despite considerable efforts, an understanding of how molecular events during the photocycle, including the retinal trans-cis isomerization and the deprotonation/reprotonation of the Schiff base, are coupled to the channel-opening mechanism remains elusive. To elucidate this question, changes of conformation and configuration of several photocycle and conducting/nonconducting states need to be determined at atomic resolution. Here, we show that such data can be obtained by solid-state NMR enhanced by dynamic nuclear polarization applied to (15)N-labeled channelrhodopsin-2 carrying 14,15-(13)C2 retinal reconstituted into lipid bilayers. In its dark state, a pure all-trans retinal conformation with a stretched C14-C15 bond and a significant out-of-plane twist of the H-C14-C15-H dihedral angle could be observed. Using a combination of illumination, freezing, and thermal relaxation procedures, a number of intermediate states was generated and analyzed by DNP-enhanced solid-state NMR. Three distinct intermediates could be analyzed with high structural resolution: the early [Formula: see text] K-like state, the slowly decaying late intermediate [Formula: see text], and a third intermediate populated only under continuous illumination conditions. Our data provide novel insight into the photoactive site of channelrhodopsin-2 during the photocycle. They further show that DNP-enhanced solid-state NMR fills the gap for challenging membrane proteins between functional studies and X-ray-based structure analysis, which is required for resolving molecular mechanisms.

Indexed as

LightMagnetic Resonance SpectroscopyCarbon IsotopesCatalytic DomainChlamydomonas reinhardtiiDarknessLipid BilayersNitrogen IsotopesProtein MultimerizationRhodopsinCarbon IsotopesLipid BilayersNitrogen IsotopesRhodopsinchannelrhodopsinDNPfreeze trappingretinalsolid-state NMR

Identifiers

PMID26216996
PMCPMC4538646

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.