Evidence map›Paper›PMID 26216967›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Inactive conformation enhances binding function in physiological conditions.

Olga Yakovenko, Veronika Tchesnokova, Evgeni V Sokurenko, Wendy E Thomas

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. FimH as a scaffold for regulated molecular recognition.Journal of biological engineering · 2021
    Article
  13. Review
  14. High integrin αProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  15. Article
  16. Review
  17. Adhesion of Escherichia coli under flow conditions reveals potential novel effects of FimH mutations.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Olga YakovenkoDepartment of Bioengineering, University of Washington, Seattle, WA 98195;
Veronika TchesnokovaDepartment of Microbiology, University of Washington, Seattle, WA 98195.
Evgeni V SokurenkoDepartment of Microbiology, University of Washington, Seattle, WA 98195.
Wendy E ThomasDepartment of Bioengineering, University of Washington, Seattle, WA 98195; wendyt@uw.edu.
University of Washington · US

Funding

Dynamic Properties of Bacterial AdhesionsR01AI050940 · NIAID · UNIVERSITY OF WASHINGTON · PI SOKURENKO, EVGENI VENIAMINOVIC · 2002 to 2011
$4.7M
Mechanisms for ligand binding by serine-rich adhesins of Gram-positive pathogensR01AI106987 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI IVERSON, T M, SULLAM, PAUL M. · 2014 to 2018
$3.4M
NIAID NIH HHS R01 AI050940NIAID NIH HHS R01 AI106987
6 · The paper itself

Abstract

Many receptors display conformational flexibility, in which the binding pocket has an open inactive conformation in the absence of ligand and a tight active conformation when bound to ligand. Here we study the bacterial adhesin FimH to address the role of the inactive conformation of the pocket for initiating binding by comparing two variants: a wild-type FimH variant that is in the inactive state when not bound to its target mannose, and an engineered activated variant that is always in the active state. Not surprisingly, activated FimH has a longer lifetime and higher affinity, and bacteria expressing activated FimH bound better in static conditions. However, bacteria expressing wild-type FimH bound better in flow. Wild-type and activated FimH demonstrated similar mechanical strength, likely because mechanical force induces the active state in wild-type FimH. However, wild-type FimH displayed a faster bond association rate than activated FimH. Moreover, the ability of different FimH variants to mediate adhesion in flow reflected the fraction of FimH in the inactive state. These results demonstrate a new model for ligand-associated conformational changes that we call the kinetic-selection model, in which ligand-binding selects the faster-binding inactive state and then induces the active state. This model predicts that in physiological conditions for cell adhesion, mechanical force will drive a nonequilibrium cycle that uses the fast binding rate of the inactive state and slow unbinding rate of the active state, for a higher effective affinity than is possible at equilibrium.

Indexed as

Adhesins, Escherichia coliAnimalsBacterial AdhesionBiomechanical PhenomenaCattleEscherichia coliFimbriae, BacterialFimbriae ProteinsKineticsMannoseMicroscopy, Atomic ForceModels, MolecularMutant ProteinsProtein BindingProtein ConformationRheologyAdhesins, Escherichia coliFimbriae ProteinsfimH protein, E coliMannoseMutant ProteinsSerum Albumin, Bovineadhesionconformational dynamicsligandmechanical forcereceptor

Identifiers

PMID26216967
PMCPMC4538629
OpenAlexW1844551654

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.