Evidence map›Paper›PMID 26216859›Full record

ArticleThe Journal of general physiology2015

Pore dimensions and the role of occupancy in unitary conductance of Shaker K channels.

Ignacio Díaz-Franulic, Romina V Sepúlveda, Nieves Navarro-Quezada, Fernando González-Nilo, David Naranjo

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. HInternational journal of molecular sciences · 2025
    Review
  3. A new twist to increase ion flow.Nature chemical biology · 2024
    Article
  4. Review
  5. Modulation of the IBBA advances · 2023
    Article
  6. Review
  7. Article
  8. TOK channels use the two gates in classical KFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Gating-induced large aqueous volumetric remodeling and aspartate tolerance in the voltage sensor domain of Shaker KProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Pore size matters for potassium channel conductance.The Journal of general physiology · 2016
    Review
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ignacio Díaz-FranulicCentro Interdisciplinario de Neurociencia de Valparaíso and Programa de Doctorado en Ciencias mención Neurociencia, Universidad de Valparaíso, Valparaíso 2360103, Chile Centro Interdisciplinario de Neurociencia de Valparaíso and Programa de Doctorado en Ciencias mención Neurociencia, Universidad de Valparaíso, Valparaíso 2360103, Chile.
Romina V SepúlvedaCenter for Bioinformatics and Integrative Biology, Universidad Andrés Bello, Santiago 8370146, Chile.
Nieves Navarro-QuezadaCentro Interdisciplinario de Neurociencia de Valparaíso and Programa de Doctorado en Ciencias mención Neurociencia, Universidad de Valparaíso, Valparaíso 2360103, Chile.
Fernando González-NiloCentro Interdisciplinario de Neurociencia de Valparaíso and Programa de Doctorado en Ciencias mención Neurociencia, Universidad de Valparaíso, Valparaíso 2360103, Chile Center for Bioinformatics and Integrative Biology, Universidad Andrés Bello, Santiago 8370146, Chile.
David NaranjoCentro Interdisciplinario de Neurociencia de Valparaíso and Programa de Doctorado en Ciencias mención Neurociencia, Universidad de Valparaíso, Valparaíso 2360103, Chile david.naranjo@uv.cl.
Centro Científico Tecnológico de Valparaíso · CLUniversidad Andrés Bello · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

K channels mediate the selective passage of K(+) across the plasma membrane by means of intimate interactions with ions at the pore selectivity filter located near the external face. Despite high conservation of the selectivity filter, the K(+) transport properties of different K channels vary widely, with the unitary conductance spanning a range of over two orders of magnitude. Mutation of Pro475, a residue located at the cytoplasmic entrance of the pore of the small-intermediate conductance K channel Shaker (Pro475Asp (P475D) or Pro475Gln (P475Q)), increases Shaker's reported ∼ 20-pS conductance by approximately six- and approximately threefold, respectively, without any detectable effect on its selectivity. These findings suggest that the structural determinants underlying the diversity of K channel conductance are distinct from the selectivity filter, making P475D and P475Q excellent probes to identify key determinants of the K channel unitary conductance. By measuring diffusion-limited unitary outward currents after unilateral addition of 2 M sucrose to the internal solution to increase its viscosity, we estimated a pore internal radius of capture of ∼ 0.82 Å for all three Shaker variants (wild type, P475D, and P475Q). This estimate is consistent with the internal entrance of the Kv1.2/2.1 structure if the effective radius of hydrated K(+) is set to ∼ 4 Å. Unilateral exposure to sucrose allowed us to estimate the internal and external access resistances together with that of the inner pore. We determined that Shaker resistance resides mainly in the inner cavity, whereas only ∼ 8% resides in the selectivity filter. To reduce the inner resistance, we introduced additional aspartate residues into the internal vestibule to favor ion occupancy. No aspartate addition raised the maximum unitary conductance, measured at saturating [K(+)], beyond that of P475D, suggesting an ∼ 200-pS conductance ceiling for Shaker. This value is approximately one third of the maximum conductance of the large conductance K (BK) channel (the K channel of highest conductance), reducing the energy gap between their K(+) transport rates to ∼ 1 kT. Thus, although Shaker's pore sustains ion translocation as the BK channel's does, higher energetic costs of ion stabilization or higher friction with the ion's rigid hydration cage in its narrower aqueous cavity may entail higher resistance.

Indexed as

Ion Channel GatingAction PotentialsAmino Acid SequenceAnimalsBinding SitesMolecular Sequence DataMutation, MissensePotassiumShaker Superfamily of Potassium ChannelsXenopusPotassiumShaker Superfamily of Potassium Channels

Identifiers

PMID26216859
PMCPMC4516780
OpenAlexW2099319597

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.