Evidence map›Paper›PMID 26215656›Full record

ArticleBMC plant biology2015

The Phytoene synthase gene family of apple (Malus x domestica) and its role in controlling fruit carotenoid content.

Charles Ampomah-Dwamena, Nicky Driedonks, David Lewis, Maria Shumskaya, Xiuyin Chen, Eleanore T Wurtzel, Richard V Espley, Andrew C Allan

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Overexpression ofFrontiers in plant science · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Frontiers in plant science · 2021
    Article
  17. Article
  18. IlluminaInternational journal of molecular sciences · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Charles Ampomah-DwamenaThe New Zealand Institute for Plant & Food Research Limited, Private Bag 92169, Auckland, 1142, New Zealand. charles.dwamena@plantandfood.co.nz.
Nicky DriedonksThe New Zealand Institute for Plant & Food Research Limited, Private Bag 92169, Auckland, 1142, New Zealand. n.driedonks@science.ru.nl.
David LewisThe New Zealand Institute for Plant & Food Research Limited, Private Bag 11600, Palmerston North, 4442, New Zealand. david.lewis@plantandfood.co.nz.
Maria ShumskayaDepartment of Biological Sciences, Lehman College, The City University of New York, 250 Bedford Park Blvd. West, Bronx, New York, NY, 10468, USA. mashum@gmail.com.
Xiuyin ChenThe New Zealand Institute for Plant & Food Research Limited, Private Bag 92169, Auckland, 1142, New Zealand. xiuyin.chen@plantandfood.co.nz.
Eleanore T WurtzelDepartment of Biological Sciences, Lehman College, The City University of New York, 250 Bedford Park Blvd. West, Bronx, New York, NY, 10468, USA. eleanore.wurtzel@lehman.cuny.edu.
Richard V EspleyThe New Zealand Institute for Plant & Food Research Limited, Private Bag 92169, Auckland, 1142, New Zealand. richard.espley@plantandfood.co.nz.
Andrew C AllanThe New Zealand Institute for Plant & Food Research Limited, Private Bag 92169, Auckland, 1142, New Zealand. andrew.allan@plantandfood.co.nz.
Plant & Food Research · NZLehman College · USThe Graduate Center, CUNY · US

Funding

REGULATION OF PROVITAMIN A CAROTENOID BIOSYNTHESIS IN MAIZESC1GM081160 · NIGMS · HERBERT H. LEHMAN COLLEGE · PI WURTZEL, ELEANORE T · 2007 to 2010
$1.7M
NIGMS NIH HHS GM081160NIGMS NIH HHS SC1 GM081160
6 · The paper itself

Abstract

backgroundCarotenoid compounds play essential roles in plants such as protecting the photosynthetic apparatus and in hormone signalling. Coloured carotenoids provide yellow, orange and red colour to plant tissues, as well as offering nutritional benefit to humans and animals. The enzyme phytoene synthase (PSY) catalyses the first committed step of the carotenoid biosynthetic pathway and has been associated with control of pathway flux. We characterised four PSY genes found in the apple genome to further understand their involvement in fruit carotenoid accumulation.

resultsThe apple PSY gene family, containing six members, was predicted to have three functional members, PSY1, PSY2, and PSY4, based on translation of the predicted gene sequences and/or corresponding cDNAs. However, only PSY1 and PSY2 showed activity in a complementation assay. Protein localisation experiments revealed differential localization of the PSY proteins in chloroplasts; PSY1 and PSY2 localized to the thylakoid membranes, while PSY4 localized to plastoglobuli. Transcript levels in 'Granny Smith' and 'Royal Gala' apple cultivars showed PSY2 was most highly expressed in fruit and other vegetative tissues. We tested the transient activation of the apple PSY1 and PSY2 promoters and identified potential and differential regulation by AP2/ERF transcription factors, which suggested that the PSY genes are controlled by different transcriptional mechanisms.

conclusionThe first committed carotenoid pathway step in apple is controlled by MdPSY1 and MdPSY2, while MdPSY4 play little or no role in this respect. This has implications for apple breeding programmes where carotenoid enhancement is a target and would allow co-segregation with phenotypes to be tested during the development of new cultivars.

Indexed as

Gene Expression Regulation, PlantAmino Acid SequenceCarotenoidsFruitGeranylgeranyl-Diphosphate GeranylgeranyltransferaseMalusPhylogenyPlant ProteinsSequence AlignmentCarotenoidsGeranylgeranyl-Diphosphate GeranylgeranyltransferasePlant Proteins

Identifiers

PMID26215656
PMCPMC4517366
OpenAlexW1648212852

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.