Evidence map›Paper›PMID 26215614›Full record

ArticleNature communications2015

A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae.

John M Atack, Yogitha N Srikhanta, Kate L Fox, Joseph A Jurcisek, Kenneth L Brockman, Tyson A Clark, Matthew Boitano, Peter M Power, Freda E-C Jen, Alastair G McEwan and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
8.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 121 citations in OpenAlex.

  1. Establishment of a chinchilla model ofMicrobiology spectrum · 2026
    Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Exploiting haem-iron dependence of nontypeableFrontiers in cellular and infection microbiology · 2025
    Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Phasevarions inMicrobiology spectrum · 2024
    Article
  12. Persistent microbial infections and idiopathic pulmonary fibrosis - an insight intoFrontiers in cellular and infection microbiology · 2024
    Review
  13. Article
  14. Article
  15. Comparison ofEpigenomes · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Antimicrobial resistance and mechanisms of epigenetic regulation.Frontiers in cellular and infection microbiology · 2023
    Review

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

John M AtackInstitute for Glycomics, Griffith University, Gold Coast, Queensland 4222, Australia.
Yogitha N SrikhantaInstitute for Glycomics, Griffith University, Gold Coast, Queensland 4222, Australia.
Kate L FoxSchool of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia.
Joseph A JurcisekCenter for Microbial Pathogenesis, The Research Institute at Nationwide Children's Hospital and The Ohio State University College of Medicine, Columbus, Ohio 43205, USA.
Kenneth L BrockmanCenter for Microbial Pathogenesis, The Research Institute at Nationwide Children's Hospital and The Ohio State University College of Medicine, Columbus, Ohio 43205, USA.
Tyson A ClarkPacific Biosciences, 1380 Willow Road, Menlo Park, California 94025, USA.
Matthew BoitanoPacific Biosciences, 1380 Willow Road, Menlo Park, California 94025, USA.
Peter M PowerInstitute for Glycomics, Griffith University, Gold Coast, Queensland 4222, Australia.
Freda E-C JenInstitute for Glycomics, Griffith University, Gold Coast, Queensland 4222, Australia.
Alastair G McEwanSchool of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia.
Sean M GrimmondInstitute of Molecular Bioscience, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia.
Arnold L SmithCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, Washington 98105, USA.
Stephen J BarenkampDepartment of Pediatrics, Saint Louis University School of Medicine, and the Pediatric Research Institute, Cardinal Glennon Children's Medical Center, Saint Louis, Missouri 63104, USA.
Jonas KorlachPacific Biosciences, 1380 Willow Road, Menlo Park, California 94025, USA.
Lauren O BakaletzCenter for Microbial Pathogenesis, The Research Institute at Nationwide Children's Hospital and The Ohio State University College of Medicine, Columbus, Ohio 43205, USA.
Michael P JenningsInstitute for Glycomics, Griffith University, Gold Coast, Queensland 4222, Australia.ORCID 0000000210274684
Griffith University · AUNationwide Children's Hospital · USPacific Biosciences (United States) · USThe University of Queensland · AUCardinal Glennon Children’s Medical Center · USCenter for Infectious Disease Research · US

Funding

DETERMINANTS OF H. INFLUENZAE VIRULENCE IN OTITIS MEDIAR01DC003915 · NIDCD · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI GOODMAN, STEVEN D · 1999 to 2025
$12.5M
Development of a vaccine for prevention of Haemophilus influenzae otitis mediaR01AI081887 · NIAID · SAINT LOUIS UNIVERSITY · PI BARENKAMP, STEPHEN J. · 2011 to 2014
$1.2M
NIAID NIH HHS R01 AI081887NIAID NIH HHS R01AI 81887NIDCD NIH HHS R01 DC003915NIDCD NIH HHS R01DC003915
6 · The paper itself

Abstract

Non-typeable Haemophilus influenzae contains an N(6)-adenine DNA-methyltransferase (ModA) that is subject to phase-variable expression (random ON/OFF switching). Five modA alleles, modA2, modA4, modA5, modA9 and modA10, account for over two-thirds of clinical otitis media isolates surveyed. Here, we use single molecule, real-time (SMRT) methylome analysis to identify the DNA-recognition motifs for all five of these modA alleles. Phase variation of these alleles regulates multiple proteins including vaccine candidates, and key virulence phenotypes such as antibiotic resistance (modA2, modA5, modA10), biofilm formation (modA2) and immunoevasion (modA4). Analyses of a modA2 strain in the chinchilla model of otitis media show a clear selection for ON switching of modA2 in the middle ear. Our results indicate that a biphasic epigenetic switch can control bacterial virulence, immunoevasion and niche adaptation in an animal model system.

Indexed as

Epigenesis, GeneticAdaptation, PhysiologicalAllelesAnimalsBase SequenceBiofilmsChinchillaDisease Models, AnimalDNA, BacterialDNA MethylationEar, MiddleHaemophilus influenzaeImmune EvasionMolecular Sequence DataOtitis MediaSite-Specific DNA-Methyltransferase (Adenine-Specific)DNA, BacterialSite-Specific DNA-Methyltransferase (Adenine-Specific)

Identifiers

PMID26215614
PMCPMC4525171
OpenAlexW967469635

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.