Evidence map›Paper›PMID 26214695›Full record

ArticlePloS one2015

Virulence Factors of Streptococcus pneumoniae. Comparison between African and French Invasive Isolates and Implication for Future Vaccines.

Sophie Blumental, Alexandra Granger-Farbos, Jennifer C Moïsi, Bruno Soullié, Philippe Leroy, Berthe-Marie Njanpop-Lafourcade, Seydou Yaro, Boubacar Nacro, Marie Hallin, Jean-Louis Koeck

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Post-VaccinationMicroorganisms · 2020
    Article
  7. Article
  8. Article
  9. Genomic Characteristics of InvasiveBioinformatics and biology insights · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Frontiers in immunology · 2018
    Review
  15. Article
  16. Strain LevelFrontiers in microbiology · 2017
    Article
  17. Article
  18. [Streptococcus pneumoniae induces SPLUNC1 and the regulatory effects of resveratrol].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2017
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Sophie BlumentalPaediatric Infectious Diseases Unit, Hôpital Universitaire des Enfants Reine Fabiola, Brussels, Belgium.
Alexandra Granger-FarbosMolecular Biology Lab, Biology Department, Hôpital d'Instruction des Armées Robert Picqué, Bordeaux, France.
Jennifer C MoïsiAgence de Médecine Préventive, Paris, France.
Bruno SoulliéMolecular Biology Lab, Biology Department, Hôpital d'Instruction des Armées Robert Picqué, Bordeaux, France.
Philippe LeroyMolecular Biology Lab, Biology Department, Hôpital d'Instruction des Armées Robert Picqué, Bordeaux, France.
Berthe-Marie Njanpop-LafourcadeAgence de Médecine Préventive, Paris, France.
Seydou YaroCentre Muraz, Bobo-Dioulasso, Burkina Faso.
Boubacar NacroPaediatric Unit, Centre Hospitalier Universitaire Sourô Sanou, Bobo-Dioulasso, Burkina Faso.
Marie HallinCentre for Molecular Diagnosis, IRIS Lab, Brussels, Belgium.
Jean-Louis KoeckMolecular Biology Lab, Biology Department, Hôpital d'Instruction des Armées Robert Picqué, Bordeaux, France.
Agence de Médecine Préventive · FRCentre Muraz · BFHôpitaux Iris Sud · BENazi Boni University · BFQueen Fabiola Children's University Hospital · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMany surface proteins thought to promote Streptocococcus pneumoniae virulence have recently been discovered and are currently being considered as future vaccine targets. We assessed the prevalence of 16 virulence genes among 435 S. pneumoniae invasive isolates from France and the "African meningitis belt" region, with particular focus on serotype 1 (Sp1), to compare their geographical distribution, assess their association with site of infection and evaluate their potential interest as new vaccine candidates.

methodsDetection by PCR of pspA (+families), pspC (+pspC.4), pavA, lytA, phtA,B,D,E, nanA,B,C, rrgA (Pilus-1), sipA (Pilus-2), pcpA and psrp was performed on all isolates, as well as antibiotic resistance testing and MLVA typing (+MLST on 54 representative strains). Determination of ply alleles was performed by sequencing (Sp1 isolates).

resultsMLVA and virulence genes profiles segregated Sp1 isolates into 2 groups that followed continent distribution. The ply allele 5 and most of the genes that were variable (nanC, Pilus-2, psrp, pcpA, phtD) were present in the French Sp1 isolates (PMEN clone Sweden(1)-28, ST306) but absent from the African ones. Whereas all African Sp1 isolates clustered into a single MLST CC (CC217), MLVA distinguished two CCs that followed temporal evolution. Pilus-2 and psrp were more prevalent in bacteraemic pneumonia yielded isolates and phtB in meningitis-related isolates. Considering vaccine candidates, phtD was less prevalent than anticipated (50%) and pcpA varied importantly between France and Africa (98% versus 34%). Pilus-1 was carried by 7-11% of isolates and associated with β-lactams resistance.

conclusionsMost virulence genes were carried by the European ST306 clone but were lacking on Sp1 isolates circulating in the African meningitis belt, where a more serious pattern of infection is observed. While virulence proteins are now considered as vaccine targets, the geographical differences in their prevalence could affect the efficacy expected from future vaccines.

Indexed as

AfricaAnti-Bacterial AgentsBacterial ProteinsFranceHumansMeningitis, PneumococcalMicrobial Sensitivity TestsMultilocus Sequence TypingPneumococcal InfectionsStreptococcal VaccinesStreptococcus pneumoniaeVirulenceVirulence FactorsAnti-Bacterial AgentsBacterial ProteinsStreptococcal VaccinesVirulence Factors

Identifiers

PMID26214695
PMCPMC4516325
OpenAlexW1895071906

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.