Evidence map›Paper›PMID 26214585›Full record

ArticleACS chemical biology2015

Virtual Screening for UDP-Galactopyranose Mutase Ligands Identifies a New Class of Antimycobacterial Agents.

Virginia A Kincaid, Nir London, Kittikhun Wangkanont, Darryl A Wesener, Sarah A Marcus, Annie Héroux, Lyudmila Nedyalkova, Adel M Talaat, Katrina T Forest, Brian K Shoichet and 1 more

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. The Art and Science of Molecular Docking.Annual review of biochemistry · 2024
    Review
  5. Novel [1,2,4]triazolo[3,4-Molecules (Basel, Switzerland) · 2022
    Article
  6. Review
  7. Accelerating AutoDock4 with GPUs and Gradient-Based Local Search.Journal of chemical theory and computation · 2021
    Article
  8. Article
  9. Biosynthesis of Galactan inAntibiotics (Basel, Switzerland) · 2020
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Comparing Galactan Biosynthesis inThe Journal of biological chemistry · 2017
    Article
  15. Bioinformatics and Drug Discovery.Current topics in medicinal chemistry · 2017
    Review
  16. Article
  17. Article
  18. Article
  19. Computational Methods Applied to Rational Drug Design.The open medicinal chemistry journal · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Virginia A KincaidDepartment of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Nir LondonDepartment of Pharmaceutical Chemistry, University of California-San Francisco , San Francisco, California 94158, United States.
Kittikhun WangkanontDepartment of Chemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Darryl A WesenerDepartment of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Sarah A MarcusDepartment of Pathobiological Sciences, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Annie HérouxPhoton Sciences Directorate, Brookhaven National Laboratories , Upton, New York 11973, United States.
Lyudmila NedyalkovaOntario Institute of Cancer Research and Faculty of Pharmacy, University of Toronto , Toronto, Canada.
Adel M TalaatDepartment of Pathobiological Sciences, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Katrina T ForestDepartment of Bacteriology, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Brian K ShoichetDepartment of Pharmaceutical Chemistry, University of California-San Francisco , San Francisco, California 94158, United States.
Laura L KiesslingDepartment of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
University of Wisconsin–Madison · USInstitute of Cancer Research · CABrookhaven National Laboratory · USUniversity of California, San Francisco · US

Funding

X-RAY STRUCTURE OF RIFM PROTEIN FROM THE BIOSYNTHESIS PATHWAY OF THE ANSAMYCIN AP41RR012408 · NCRR · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI ORVILLE, ALLEN M · 1998 to 2011
$32.2M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Chemistry-Biology Interface Training ProgramT32GM008505 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BLACKWELL, HELEN E. · 1993 to 2023
$9.8M
Macromolecular Crystallography at the National Synchrotron Light SourceP41GM103473 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SWEET, ROBERT M · 2012 to 2013
$4.9M
DESIGN AND EXPERIMENTAL TESTING OF NEW DOCKING METHODSR01GM059957 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHOICHET, BRIAN K · 1999 to 2017
$4.4M
A Specific Mechanism for Non-Specific InhibitionR01GM071630 · NIGMS · UNIVERSITY OF TORONTO · PI SHOICHET, BRIAN K · 2004 to 2016
$3.6M
The Chemistry and Biology of Galactofuranose ResiduesR01AI063596 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KIESSLING, LAURA L · 2005 to 2014
$3.0M
Characterization of A Novel Regulatory Protein in M. tuberculosisR21AI090308 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI TALAAT, ADEL M · 2011 to 2012
$401k
NCRR NIH HHS P41 RR012408NCRR NIH HHS P41RR012408NIAID NIH HHS R01 AI063596NIAID NIH HHS R21 AI090308NIAID NIH HHS R21AI090308NIGMS NIH HHS P41 GM103473NIGMS NIH HHS P41GM103473NIGMS NIH HHS P41 GM111244NIGMS NIH HHS R01 GM059957NIGMS NIH HHS R01 GM071630NIGMS NIH HHS R01 GM59957NIGMS NIH HHS R01 GM71630NIGMS NIH HHS T32 GM008505
6 · The paper itself

Abstract

Galactofuranose (Galf) is present in glycans critical for the virulence and viability of several pathogenic microbes, including Mycobacterium tuberculosis, yet the monosaccharide is absent from mammalian glycans. Uridine 5'-diphosphate-galactopyranose mutase (UGM) catalyzes the formation of UDP-Galf, which is required to produce Galf-containing glycoconjugates. Inhibitors of UGM have therefore been sought, both as antimicrobial leads and as tools to delineate the roles of Galf in cells. Obtaining cell permeable UGM probes by either design or high throughput screens has been difficult, as has elucidating how UGM binds small molecule, noncarbohydrate inhibitors. To address these issues, we employed structure-based virtual screening to uncover new inhibitor chemotypes, including a triazolothiadiazine series. These compounds are among the most potent antimycobacterial UGM inhibitors described. They also facilitated determination of a UGM-small molecule inhibitor structure, which can guide optimization. A comparison of results from the computational screen and a high-throughput fluorescence polarization (FP) screen indicated that the scaffold hits from the former had been evaluated in the FP screen but missed. By focusing on promising compounds, the virtual screen rescued false negatives, providing a blueprint for generating new UGM probes and therapeutic leads.

Indexed as

Molecular Docking SimulationAnti-Bacterial AgentsCrystallography, X-RayDrug Evaluation, PreclinicalIntramolecular TransferasesLigandsModels, BiologicalMolecular StructureAnti-Bacterial AgentsIntramolecular TransferasesLigandsUDP-galactopyranose mutase

Identifiers

PMID26214585
PMCPMC4669066
OpenAlexW2471533249

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.