Evidence map›Paper›PMID 26214373›Full record

ArticleNature neuroscience2015

Identification of neurodegenerative factors using translatome-regulatory network analysis.

Lars Brichta, William Shin, Vernice Jackson-Lewis, Javier Blesa, Ee-Lynn Yap, Zachary Walker, Jack Zhang, Jean-Pierre Roussarie, Mariano J Alvarez, Andrea Califano and 2 more

Abstract read
In one paragraph

Article in Nature neuroscience, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. A neuron type-specific microexon inbioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Aging, cellular senescence and Parkinson's disease.Journal of Parkinson's disease · 2025
    Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Autophagy · 2023
    Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Lars BrichtaLaboratory of Molecular and Cellular Neuroscience, The Rockefeller University, New York, New York, USA.
William ShinDepartment of Systems Biology, Columbia University, New York, New York, USA.
Vernice Jackson-LewisDepartment of Neurology, Columbia University, New York, New York, USA.
Javier BlesaDepartment of Neurology, Columbia University, New York, New York, USA.
Ee-Lynn YapLaboratory of Molecular and Cellular Neuroscience, The Rockefeller University, New York, New York, USA.
Zachary WalkerLaboratory of Molecular and Cellular Neuroscience, The Rockefeller University, New York, New York, USA.
Jack ZhangLaboratory of Molecular and Cellular Neuroscience, The Rockefeller University, New York, New York, USA.ORCID http://orcid.org/0000-0001-8766-1749
Jean-Pierre RoussarieLaboratory of Molecular and Cellular Neuroscience, The Rockefeller University, New York, New York, USA.
Mariano J AlvarezDepartment of Systems Biology, Columbia University, New York, New York, USA.ORCID http://orcid.org/0000-0002-7503-2491
Andrea CalifanoDepartment of Systems Biology, Columbia University, New York, New York, USA.
Serge PrzedborskiDepartment of Neurology, Columbia University, New York, New York, USA.
Paul GreengardLaboratory of Molecular and Cellular Neuroscience, The Rockefeller University, New York, New York, USA.

Funding

CELLULAR AND MOLECULAR FOUNDATIONS OF BIOMEDICAL SCIENCET32GM008798 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRYWES, RON M · 2001 to 2018
$6.3M
Role of MMP-9 in selective motor neuron degeneration in ALSR01NS072428 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PRZEDBORSKI, SERGE E · 2013 to 2017
$1.7M
Signaling pathways of necroptosisR21NS088009 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PRZEDBORSKI, SERGE E · 2014 to 2015
$440k
Evaluating HMG-CoA reductase as a therapeutic target in ALSR21NS078614 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PRZEDBORSKI, SERGE E · 2013 to 2014
$438k
NIGMS NIH HHS T32 GM008798NINDS NIH HHS NS072428NINDS NIH HHS NS078614NINDS NIH HHS NS088009NINDS NIH HHS R01 NS072428NINDS NIH HHS R21 NS078614NINDS NIH HHS R21 NS088009
6 · The paper itself

Abstract

For degenerative disorders of the CNS, the main obstacle to therapeutic advancement has been the challenge of identifying the key molecular mechanisms underlying neuronal loss. We developed a combinatorial approach including translational profiling and brain regulatory network analysis to search for key determinants of neuronal survival or death. Following the generation of transgenic mice for cell type-specific profiling of midbrain dopaminergic neurons, we established and compared translatome libraries reflecting the molecular signature of these cells at baseline or under degenerative stress. Analysis of these libraries by interrogating a context-specific brain regulatory network led to the identification of a repertoire of intrinsic upstream regulators that drive the dopaminergic stress response. The altered activity of these regulators was not associated with changes in their expression levels. This strategy can be generalized for the identification of molecular determinants involved in the degeneration of other classes of neurons.

Indexed as

AnimalsDopaminergic NeuronsMaleMesencephalonMiceMice, Inbred C57BLMice, TransgenicNerve NetNeurodegenerative DiseasesProtein BiosynthesisSubstantia Nigra

Identifiers

PMID26214373
PMCPMC4763340

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.