Evidence map›Paper›PMID 26212336›Full record

ArticleScientific reports2015

MitoRCA-seq reveals unbalanced cytocine to thymine transition in Polg mutant mice.

Ting Ni, Gang Wei, Ting Shen, Miao Han, Yaru Lian, Haihui Fu, Yan Luo, Yanqin Yang, Jie Liu, Yoshi Wakabayashi and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Ting Ni1] State Key Laboratory of Genetic Engineering &Ministry of Education (MOE) Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200438, P.R. China [2] Genetics and Development Biology Center, National Heart Lung Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Gang WeiState Key Laboratory of Genetic Engineering &Ministry of Education (MOE) Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200438, P.R. China.
Ting ShenState Key Laboratory of Genetic Engineering &Ministry of Education (MOE) Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200438, P.R. China.
Miao HanState Key Laboratory of Genetic Engineering &Ministry of Education (MOE) Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200438, P.R. China.
Yaru LianState Key Laboratory of Genetic Engineering &Ministry of Education (MOE) Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200438, P.R. China.
Haihui FuState Key Laboratory of Genetic Engineering &Ministry of Education (MOE) Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200438, P.R. China.
Yan LuoGenetics and Development Biology Center, National Heart Lung Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Yanqin YangGenetics and Development Biology Center, National Heart Lung Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Jie LiuLaboratory of Molecular Biology, National Heart Lung Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Yoshi WakabayashiGenetics and Development Biology Center, National Heart Lung Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Zheng LiUnit on Synapse Development and Plasticity, National Institute of Mental Health, National Institutes of Health, Bethesda, Maryland 20892, USA.
Toren FinkelLaboratory of Molecular Biology, National Heart Lung Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Hong XuGenetics and Development Biology Center, National Heart Lung Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Jun ZhuGenetics and Development Biology Center, National Heart Lung Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Fudan University · CNNational Heart Lung and Blood Institute · USNational Institutes of Health · USState Key Laboratory of Genetic Engineering

Funding

Mitochondrial DNA inheritance in DrosophilaZIAHL006153 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI XU, HONG · 2012 to 2025
$26.5M
Non-apoptotic function of casapses in synapsesZIAMH002881 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI LI, ZHENG · 2009 to 2025
$18.9M
DNA Sequencing Core (DSC)ZICHL006058 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHU, JUN · 2010 to 2016
$16.6M
Stem cells and agingZIAHL006037 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI FINKEL, TOREN · 2010 to 2016
$6.8M
Intramural NIH HHS
6 · The paper itself

Abstract

Mutations in mitochondrial DNA (mtDNA) can lead to a wide range of human diseases. We have developed a deep sequencing strategy, mitoRCA-seq, to detect low-frequency mtDNA point mutations starting with as little as 1 ng of total DNA. It employs rolling circle amplification, which enriches the full-length circular mtDNA by either custom mtDNA-specific primers or a commercial kit, and minimizes the contamination of nuclear encoded mitochondrial DNA (Numts). By analyzing the mutation profiles of wild-type and Polg (mitochondrial DNA polymerase γ) mutant mice, we found that mice with the proofreading deficient mtDNA polymerase have a significantly higher mutation load by expanding the number of mutation sites and to a lesser extent by elevating the mutation frequency at existing sites even before the premature aging phenotypes appear. Strikingly, cytocine (C) to thymine (T) transitions are found to be overrepresented in the mtDNA of Polg mutated mice. The C → T transition, compared to other types of mutations, tends to increase the hydrophobicity of the underlying amino acids, and may contribute to the impaired protein function of the Polg mutant mice. Taken together, our findings may provide clues to further investigate the molecular mechanism underlying premature aging phenotype in Polg mutant mice.

Indexed as

CytosineThymineAmino Acid SequenceAmino Acid SubstitutionAnimalsDNA-Directed DNA PolymeraseDNA, MitochondrialDNA Polymerase gammaMiceMice, Mutant StrainsMolecular Sequence DataPoint MutationSequence Analysis, DNACytosineDNA-Directed DNA PolymeraseDNA, MitochondrialDNA Polymerase gammaPolg protein, mouseThymine

Identifiers

PMID26212336
PMCPMC4648470
OpenAlexW2263448251

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.