Evidence map›Paper›PMID 26212332›Full record

ArticleCell reports2015

RING Dimerization Links Higher-Order Assembly of TRIM5α to Synthesis of K63-Linked Polyubiquitin.

Zinaida Yudina, Amanda Roa, Rory Johnson, Nikolaos Biris, Daniel A de Souza Aranha Vieira, Vladislav Tsiperson, Natalia Reszka, Alexander B Taylor, P John Hart, Borries Demeler and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 83 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Zinaida YudinaDepartment of Biochemistry, University of Texas Health Science Center, San Antonio, TX 78229, USA.
Amanda RoaMicrobiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Rory JohnsonDepartment of Biochemistry, University of Texas Health Science Center, San Antonio, TX 78229, USA.
Nikolaos BirisDepartment of Biochemistry, University of Texas Health Science Center, San Antonio, TX 78229, USA.
Daniel A de Souza Aranha VieiraMicrobiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Vladislav TsipersonMicrobiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Natalia ReszkaMicrobiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Alexander B TaylorDepartment of Biochemistry, University of Texas Health Science Center, San Antonio, TX 78229, USA; X-ray Crystallography Core Laboratory, University of Texas Health Science Center, San Antonio, TX 78229, USA.
P John HartDepartment of Biochemistry, University of Texas Health Science Center, San Antonio, TX 78229, USA; X-ray Crystallography Core Laboratory, University of Texas Health Science Center, San Antonio, TX 78229, USA; Geriatric Research, Education, and Clinical Center, Department of Veterans Affairs, South Texas Veterans Health Care System, San Antonio, TX 78229, USA.
Borries DemelerDepartment of Biochemistry, University of Texas Health Science Center, San Antonio, TX 78229, USA.
Felipe Diaz-GrifferoMicrobiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA. Electronic address: felipe.diaz-griffero@einstein.yu.edu.
Dmitri N IvanovDepartment of Biochemistry, University of Texas Health Science Center, San Antonio, TX 78229, USA. Electronic address: ivanov@uthscsa.edu.
The University of Texas Health Science Center at San Antonio · USAlbert Einstein College of Medicine · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Role of Cellular Factors in Retroviral Uncoating and Synthesis of Viral DNAR01AI087390 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DIAZ-GRIFFERO, FELIPE · 2010 to 2024
$6.8M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
Retroviral capsid recognition by TRIM5alpha restriction factorsR01AI104476 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI IVANOV, DMITRI N · 2014 to 2018
$1.8M
Role of the B-box-v-1 Restriction by TRIM5alpha proteinsR00MH086162 · NIMH · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI DIAZ-GRIFFERO, FELIPE · 2010 to 2011
$496k
Role of TNPO3 in HIV-1 ReplicationR21AI102824 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DIAZ-GRIFFERO, FELIPE · 2013 to 2014
$444k
Regulation of SAMHD1 antiviral activityR56AI108432 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DIAZ-GRIFFERO, FELIPE · 2014 to 2014
$431k
NCI NIH HHS P30 CA054174NCRR NIH HHS S10 RR029205NIAID NIH HHS R01 AI087390NIAID NIH HHS R01 AI104476NIAID NIH HHS R21 AI102824NIAID NIH HHS R56 AI108432NIGMS NIH HHS P41 GM103403NIGMS NIH HHS P50 GM082545NIGMS NIH HHS P50GM082545NIMH NIH HHS R00 MH086162
6 · The paper itself

Abstract

Members of the tripartite motif (TRIM) protein family of RING E3 ubiquitin (Ub) ligases promote innate immune responses by catalyzing synthesis of polyubiquitin chains linked through lysine 63 (K63). Here, we investigate the mechanism by which the TRIM5α retroviral restriction factor activates Ubc13, the K63-linkage-specific E2. Structural, biochemical, and functional characterization of the TRIM5α:Ubc13-Ub interactions reveals that activation of the Ubc13-Ub conjugate requires dimerization of the TRIM5α RING domain. Our data explain how higher-order oligomerization of TRIM5α, which is promoted by the interaction with the retroviral capsid, enhances the E3 Ub ligase activity of TRIM5α and contributes to its antiretroviral function. This E3 mechanism, in which RING dimerization is transient and depends on the interaction of the TRIM protein with the ligand, is likely to be conserved in many members of the TRIM family and may have evolved to facilitate recognition of repetitive epitope patterns associated with infection.

Indexed as

AnimalsAntiviral Restriction FactorsCarrier ProteinsCells, CulturedDogsPolyubiquitinProtein MultimerizationRetroviridaeTripartite Motif ProteinsUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesViral ProteinsAntiviral Restriction FactorsCarrier ProteinsPolyubiquitinTRIM5 protein, humanTripartite Motif ProteinsUBE2N protein, humanUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesViral Proteins

Identifiers

PMID26212332
PMCPMC4526822
OpenAlexW1602570184

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.