Evidence map›Paper›PMID 26211971›Full record

ArticleAmerican journal of human genetics2015

A Functional SNP in BNC2 Is Associated with Adolescent Idiopathic Scoliosis.

Yoji Ogura, Ikuyo Kou, Shigenori Miura, Atsushi Takahashi, Leilei Xu, Kazuki Takeda, Yohei Takahashi, Katsuki Kono, Noriaki Kawakami, Koki Uno and 25 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed, 8 pooled it
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 8 syntheses or guidelines pooled it, 137 citations in OpenAlex.

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  19. Genetics and pathogenesis of scoliosis.North American Spine Society journal · 2024
    Article
  20. Review

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 16 institutions in 2 countries.

Yoji OguraLaboratory of Bone and Joint Diseases, Center for Integrative Sciences, RIKEN, Tokyo 108-8639, Japan; Department of Orthopaedic Surgery, School of Medicine, Keio University, Tokyo 160-8582, Japan.
Ikuyo KouLaboratory of Bone and Joint Diseases, Center for Integrative Sciences, RIKEN, Tokyo 108-8639, Japan.
Shigenori MiuraDepartment of Cellular Differentiation, Institute for Frontier Medical Sciences, Kyoto University, Kyoto 606-8507, Japan.
Atsushi TakahashiLaboratory for Statistical Analysis, Center for Integrative Medical Sciences, RIKEN, Yokohama 230-0045, Japan.
Leilei XuDepartment of Spine Surgery, Nanjing Drum Tower Hospital, Nanjing University Medical School, Nanjing 210008, China.
Kazuki TakedaLaboratory of Bone and Joint Diseases, Center for Integrative Sciences, RIKEN, Tokyo 108-8639, Japan; Department of Orthopaedic Surgery, School of Medicine, Keio University, Tokyo 160-8582, Japan.
Yohei TakahashiLaboratory of Bone and Joint Diseases, Center for Integrative Sciences, RIKEN, Tokyo 108-8639, Japan; Department of Orthopaedic Surgery, School of Medicine, Keio University, Tokyo 160-8582, Japan.
Katsuki KonoDepartment of Orthopaedic Surgery, Eiju General Hospital, Tokyo 110-8645, Japan.
Noriaki KawakamiDepartment of Orthopaedic Surgery, Meijo Hospital, Nagoya 460-0001, Japan.
Koki UnoDepartment of Orthopaedic Surgery, Kobe Medical Center, National Hospital Organization, Kobe 654-0155, Japan.
Manabu ItoDepartment of Advanced Medicine for Spine and Spinal Cord Disorders, Graduate School of Medicine, Hokkaido University, Sapporo 060-8648, Japan.
Shohei MinamiDepartment of Orthopaedic Surgery, Seirei Sakura Citizen Hospital, Sakura 285-8765, Japan.
Ikuho YonezawaDepartment of Orthopaedic Surgery, School of Medicine, Juntendo University Tokyo 113-8431, Japan.
Haruhisa YanagidaDepartment of Orthopaedic Surgery, Fukuoka Children's Hospital, Fukuoka 810-0063, Japan.
Hiroshi TaneichiDepartment of Orthopaedic Surgery, School of Medicine, Dokkyo Medical University, Tochigi 321-0293, Japan.
Zezhang ZhuDepartment of Spine Surgery, Nanjing Drum Tower Hospital, Nanjing University Medical School, Nanjing 210008, China.
Taichi TsujiDepartment of Orthopaedic Surgery, Meijo Hospital, Nagoya 460-0001, Japan.
Teppei SuzukiDepartment of Orthopaedic Surgery, Kobe Medical Center, National Hospital Organization, Kobe 654-0155, Japan.
Hideki SudoDepartment of Advanced Medicine for Spine and Spinal Cord Disorders, Graduate School of Medicine, Hokkaido University, Sapporo 060-8648, Japan.
Toshiaki KotaniDepartment of Orthopaedic Surgery, Seirei Sakura Citizen Hospital, Sakura 285-8765, Japan.
Kota WatanabeDepartment of Orthopaedic Surgery, School of Medicine, Keio University, Tokyo 160-8582, Japan.
Naobumi HosoganeDepartment of Orthopaedic Surgery, School of Medicine, Keio University, Tokyo 160-8582, Japan.
Eijiro OkadaDepartment of Orthopaedic Surgery, Saiseikai Central Hospital, Tokyo 108-0073, Japan.
Aritoshi IidaLaboratory of Bone and Joint Diseases, Center for Integrative Sciences, RIKEN, Tokyo 108-8639, Japan.
Masahiro NakajimaLaboratory of Bone and Joint Diseases, Center for Integrative Sciences, RIKEN, Tokyo 108-8639, Japan.
Akihiro SudoDepartment of Orthopaedic Surgery, School of Medicine, Mie University, Tsu 514-8507, Japan.
Kazuhiro ChibaDepartment of Orthopaedic Surgery, Kitasato University Kitasato Institute Hospital, Tokyo 108-8642, Japan.
Yuji HirakiDepartment of Cellular Differentiation, Institute for Frontier Medical Sciences, Kyoto University, Kyoto 606-8507, Japan.
Yoshiaki ToyamaDepartment of Orthopaedic Surgery, School of Medicine, Keio University, Tokyo 160-8582, Japan.
Yong QiuDepartment of Spine Surgery, Nanjing Drum Tower Hospital, Nanjing University Medical School, Nanjing 210008, China.
Chisa ShukunamiDepartment of Molecular Biology and Biochemistry, Division of Basic Life Sciences, Institute of Biomedical & Health Sciences, Hiroshima University, Hiroshima 734-8553, Japan.
Yoichiro KamataniLaboratory for Statistical Analysis, Center for Integrative Medical Sciences, RIKEN, Yokohama 230-0045, Japan.
Michiaki KuboLaboratory for Genotyping Development, Center for Integrative Medical Sciences, RIKEN, Yokohama 230-0045, Japan.
Morio MatsumotoDepartment of Orthopaedic Surgery, School of Medicine, Keio University, Tokyo 160-8582, Japan.
Shiro IkegawaLaboratory of Bone and Joint Diseases, Center for Integrative Sciences, RIKEN, Tokyo 108-8639, Japan. Electronic address: sikegawa@ims.u-tokyo.ac.jp.
Keio University · JPRIKEN Center for Integrative Medical Sciences · JPNanjing Drum Tower Hospital · CNHokkaido University · JPKobe Medical Center · JPKyoto University · JPMeijo Hospital · JPSeirei Sakura Citizen Hospital · JPDokkyo Medical University · JPEiju General Hospital · JPFukuoka Children's Hospital and Medical Center for Infectious Diseases · JPHiroshima University · JPJuntendo University · JPKitasato Institute Hospital · JPMie University · JPSaiseikai Central Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adolescent idiopathic scoliosis (AIS) is the most common spinal deformity. We previously conducted a genome-wide association study (GWAS) and detected two loci associated with AIS. To identify additional loci, we extended our GWAS by increasing the number of cohorts (2,109 affected subjects and 11,140 control subjects in total) and conducting a whole-genome imputation. Through the extended GWAS and replication studies using independent Japanese and Chinese populations, we identified a susceptibility locus on chromosome 9p22.2 (p = 2.46 × 10(-13); odds ratio = 1.21). The most significantly associated SNPs were in intron 3 of BNC2, which encodes a zinc finger transcription factor, basonuclin-2. Expression quantitative trait loci data suggested that the associated SNPs have the potential to regulate the BNC2 transcriptional activity and that the susceptibility alleles increase BNC2 expression. We identified a functional SNP, rs10738445 in BNC2, whose susceptibility allele showed both higher binding to a transcription factor, YY1 (yin and yang 1), and higher BNC2 enhancer activity than the non-susceptibility allele. BNC2 overexpression produced body curvature in developing zebrafish in a gene-dosage-dependent manner. Our results suggest that increased BNC2 expression is implicated in the etiology of AIS.

Indexed as

Genetic Predisposition to DiseasePhenotypeAdolescentAnimalsChinaChromosomes, Human, Pair 9DNA-Binding ProteinsEmbryo, NonmammalianGenome-Wide Association StudyHumansJapanLuciferasesOdds RatioPolymorphism, Single NucleotideScoliosisYY1 Transcription FactorBNC2 protein, humanDNA-Binding ProteinsLuciferasesYY1 protein, humanYY1 Transcription Factor

Identifiers

PMID26211971
PMCPMC4573260
OpenAlexW1875883743

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.