Evidence map›Paper›PMID 26211554›Full record

ArticleJournal of proteome research2015

Global Proteomic Analysis of Functional Compartments in Immature Avian Follicles Using Laser Microdissection Coupled to LC-MS/MS.

Angelito I Nepomuceno, David C Muddiman, James N Petitte

Abstract read
In one paragraph

Article in Journal of proteome research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. The PeptideAtlas of the Domestic Laying Hen.Journal of proteome research · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Angelito I NepomucenoW.M. Keck Fourier Transform Mass Spectrometry Laboratory, Department of Chemistry, and ‡Prestage Department of Poultry Science, North Carolina State University , Raleigh, North Carolina 27695, United States.
David C MuddimanW.M. Keck Fourier Transform Mass Spectrometry Laboratory, Department of Chemistry, and ‡Prestage Department of Poultry Science, North Carolina State University , Raleigh, North Carolina 27695, United States.
James N PetitteW.M. Keck Fourier Transform Mass Spectrometry Laboratory, Department of Chemistry, and ‡Prestage Department of Poultry Science, North Carolina State University , Raleigh, North Carolina 27695, United States.

Funding

Development and Application of New Ionization Methods for Biological Mass SpectrometryR01GM087964 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI MUDDIMAN, DAVID C. · 2010 to 2025
$4.7M
NIGMS NIH HHS R01 GM087964NIGMS NIH HHS R01GM087964
6 · The paper itself

Abstract

Laser microdissection (LMD) was utilized for the separation of the yolk, follicular wall (granulosa and theca), and surrounding stromal cells of small white follicles (SWF) obtained from reproductively active domestic fowl. Herein, we provide an in situ proteomics-based approach to studying follicular development through the use of LMD and mass spectrometry. This study resulted in a total of 2889 proteins identified from the three specific isolated compartments. White yolk from the smallest avian follicles resulted in the identification of 1984 proteins, while isolated follicular wall and ovarian stroma yielded 2470 and 2456 proteins, respectively. GO annotations highlighted the functional differences between the compartments. Among the three compartments examined, the relative abundance of vitellogenins, steroidogenic enzymes, anti-Mullerian hormone, transcription factors, and proteins involved in retinoic acid receptors/retinoic acid synthesis, transcription factors, and cell surface receptors such as EGFR and their associated signaling pathways reflected known cellular function of the ovary. This study has provided a global proteome for SWF, white yolk, and ovarian stroma of the avian ovary that can be used as a baseline for future studies and verifies that the coupling of LMD with proteomic analysis can be used to evaluate proteins from small, physiologically functional compartments of complex tissue.

Indexed as

AnimalsAvian ProteinsChickensChromatography, LiquidFemaleLaser Capture MicrodissectionOvarian FollicleProteomeProteomicsTandem Mass SpectrometryAvian ProteinsProteomeavianchickenfolliclemicrodissectionovaryproteomicssteroidogenesisvitellogeninyolk

Identifiers

PMID26211554
PMCPMC4671083

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.