ArticleJournal of biomedical informatics2015
Ease of adoption of clinical natural language processing software: An evaluation of five systems.
Article in Journal of biomedical informatics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Designing a Web-Based Case Repository for Values Education in Early Clinical Exposure: A Conceptual Framework and Development Blueprint.Paediatric anaesthesia · 2026Article
- Portability of a text mining algorithm for detecting adverse drug reactions in electronic health records across diverse patient groups in two Dutch hospitals.PLOS digital health · 2026Article
- Additional Value From Free-Text Diagnoses in Electronic Health Records: Hybrid Dictionary and Machine Learning Classification Study.JMIR medical informatics · 2024Article
- Combining unsupervised, supervised and rule-based learning: the case of detecting patient allergies in electronic health records.BMC medical informatics and decision making · 2023Article
- Tasks as needs: reframing the paradigm of clinical natural language processing research for real-world decision support.Journal of the American Medical Informatics Association : JAMIA · 2022Article
- Multicenter Validation of Natural Language Processing Algorithms for the Detection of Common Data Elements in Operative Notes for Total Hip Arthroplasty: Algorithm Development and Validation.JMIR medical informatics · 2022Article
- Using Natural Language Processing of Clinical Notes to Predict Outcomes of Opioid Treatment Program.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference · 2022Article
- Combining human and machine intelligence for clinical trial eligibility querying.Journal of the American Medical Informatics Association : JAMIA · 2022Article
- Improving Diabetes-Related Biomedical Literature Exploration in the Clinical Decision-making Process via Interactive Classification and Topic Discovery: Methodology Development Study.Journal of medical Internet research · 2022Article
- Design, Implementation, and Usability of the Electronic Medical Record Search Engine (EMERSE) Tool.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2022Article
- DDIWAS: High-throughput electronic health record-based screening of drug-drug interactions.Journal of the American Medical Informatics Association : JAMIA · 2021Article
- A Framework (SOCRATex) for Hierarchical Annotation of Unstructured Electronic Health Records and Integration Into a Standardized Medical Database: Development and Usability Study.JMIR medical informatics · 2021Article
- Unified Medical Language System resources improve sieve-based generation and Bidirectional Encoder Representations from Transformers (BERT)-based ranking for concept normalization.Journal of the American Medical Informatics Association : JAMIA · 2020Article
- A Neuro-ontology for the neurological examination.BMC medical informatics and decision making · 2020Article
- Clinical Annotation Research Kit (CLARK): Computable Phenotyping Using Machine Learning.JMIR medical informatics · 2020Article
- Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2019Observational
- Desiderata for delivering NLP to accelerate healthcare AI advancement and a Mayo Clinic NLP-as-a-service implementation.NPJ digital medicine · 2019Review
- Using clinical Natural Language Processing for health outcomes research: Overview and actionable suggestions for future advances.Journal of biomedical informatics · 2018Article
- CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines.Journal of the American Medical Informatics Association : JAMIA · 2018Article
- A Natural Language Processing System That Links Medical Terms in Electronic Health Record Notes to Lay Definitions: System Development Using Physician Reviews.Journal of medical Internet research · 2018Article
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Authors and funding
13 authors.
Funding
Abstract
objectiveIn recognition of potential barriers that may inhibit the widespread adoption of biomedical software, the 2014 i2b2 Challenge introduced a special track, Track 3 - Software Usability Assessment, in order to develop a better understanding of the adoption issues that might be associated with the state-of-the-art clinical NLP systems. This paper reports the ease of adoption assessment methods we developed for this track, and the results of evaluating five clinical NLP system submissions. MATERIALS AND
methodsA team of human evaluators performed a series of scripted adoptability test tasks with each of the participating systems. The evaluation team consisted of four "expert evaluators" with training in computer science, and eight "end user evaluators" with mixed backgrounds in medicine, nursing, pharmacy, and health informatics. We assessed how easy it is to adopt the submitted systems along the following three dimensions: communication effectiveness (i.e., how effective a system is in communicating its designed objectives to intended audience), effort required to install, and effort required to use. We used a formal software usability testing tool, TURF, to record the evaluators' interactions with the systems and 'think-aloud' data revealing their thought processes when installing and using the systems and when resolving unexpected issues.
resultsOverall, the ease of adoption ratings that the five systems received are unsatisfactory. Installation of some of the systems proved to be rather difficult, and some systems failed to adequately communicate their designed objectives to intended adopters. Further, the average ratings provided by the end user evaluators on ease of use and ease of interpreting output are -0.35 and -0.53, respectively, indicating that this group of users generally deemed the systems extremely difficult to work with. While the ratings provided by the expert evaluators are higher, 0.6 and 0.45, respectively, these ratings are still low indicating that they also experienced considerable struggles. DISCUSSION: The results of the Track 3 evaluation show that the adoptability of the five participating clinical NLP systems has a great margin for improvement. Remedy strategies suggested by the evaluators included (1) more detailed and operation system specific use instructions; (2) provision of more pertinent onscreen feedback for easier diagnosis of problems; (3) including screen walk-throughs in use instructions so users know what to expect and what might have gone wrong; (4) avoiding jargon and acronyms in materials intended for end users; and (5) packaging prerequisites required within software distributions so that prospective adopters of the software do not have to obtain each of the third-party components on their own.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.