Evidence map›Paper›PMID 26209694›Full record

ArticleEukaryotic cell2015

Transcriptome Analysis of Aspergillus flavus Reveals veA-Dependent Regulation of Secondary Metabolite Gene Clusters, Including the Novel Aflavarin Cluster.

J W Cary, Z Han, Y Yin, J M Lohmar, S Shantappa, P Y Harris-Coward, B Mack, K C Ehrlich, Q Wei, N Arroyo-Manzanares and 11 more

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
14.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 76 citations in OpenAlex.

  1. Journal of fungi (Basel, Switzerland) · 2026
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  8. An environmental isolate ofFrontiers in microbiology · 2024
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  10. Effect ofToxins · 2023
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  11. Synthetic and systems biotechnology · 2022
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  16. Review
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  18. Review
  19. Microevolution in the pansecondary metabolome ofProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 2 countries.

J W CaryFood and Feed Safety Research Unit, USDA/ARS, Southern Regional Research Center, New Orleans, Louisiana, USA.
Z HanLaboratory of Food Analysis, Faculty of Pharmaceutical Sciences, Ghent University, Ghent, Belgium.
Y YinDepartment of Biological Sciences, Northern Illinois University, DeKalb, Illinois, USA.
J M LohmarDepartment of Biological Sciences, Northern Illinois University, DeKalb, Illinois, USA.
S ShantappaDepartment of Biological Sciences, Northern Illinois University, DeKalb, Illinois, USA.
P Y Harris-CowardFood and Feed Safety Research Unit, USDA/ARS, Southern Regional Research Center, New Orleans, Louisiana, USA.
B MackFood and Feed Safety Research Unit, USDA/ARS, Southern Regional Research Center, New Orleans, Louisiana, USA.
K C EhrlichFood and Feed Safety Research Unit, USDA/ARS, Southern Regional Research Center, New Orleans, Louisiana, USA.
Q WeiFood and Feed Safety Research Unit, USDA/ARS, Southern Regional Research Center, New Orleans, Louisiana, USA.
N Arroyo-ManzanaresLaboratory of Food Analysis, Faculty of Pharmaceutical Sciences, Ghent University, Ghent, Belgium.
V UkaLaboratory of Food Analysis, Faculty of Pharmaceutical Sciences, Ghent University, Ghent, Belgium.
L VanhaeckeDepartment of Veterinary Public Health and Food Safety, Laboratory of Chemical Analysis, Faculty of Veterinary Medicine, Ghent University, Ghent, Belgium.
D BhatnagarFood and Feed Safety Research Unit, USDA/ARS, Southern Regional Research Center, New Orleans, Louisiana, USA.
J YuFood and Feed Safety Research Unit, USDA/ARS, Southern Regional Research Center, New Orleans, Louisiana, USA.
W C NiermanJ. Craig Venter Institute, Rockville, Maryland, USA.
M A JohnsDepartment of Biological Sciences, Northern Illinois University, DeKalb, Illinois, USA.
D SorensenDepartment of Biological Sciences, Northern Illinois University, DeKalb, Illinois, USA.
H ShenDepartment of Biological Sciences, Northern Illinois University, DeKalb, Illinois, USA.
S De SaegerLaboratory of Food Analysis, Faculty of Pharmaceutical Sciences, Ghent University, Ghent, Belgium.
J Diana Di MavunguLaboratory of Food Analysis, Faculty of Pharmaceutical Sciences, Ghent University, Ghent, Belgium.
A M CalvoDepartment of Biological Sciences, Northern Illinois University, DeKalb, Illinois, USA amcalvo@niu.edu.
Northern Illinois University · USSouthern Regional Research Center · USGhent University · BEJ. Craig Venter Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The global regulatory veA gene governs development and secondary metabolism in numerous fungal species, including Aspergillus flavus. This is especially relevant since A. flavus infects crops of agricultural importance worldwide, contaminating them with potent mycotoxins. The most well-known are aflatoxins, which are cytotoxic and carcinogenic polyketide compounds. The production of aflatoxins and the expression of genes implicated in the production of these mycotoxins are veA dependent. The genes responsible for the synthesis of aflatoxins are clustered, a signature common for genes involved in fungal secondary metabolism. Studies of the A. flavus genome revealed many gene clusters possibly connected to the synthesis of secondary metabolites. Many of these metabolites are still unknown, or the association between a known metabolite and a particular gene cluster has not yet been established. In the present transcriptome study, we show that veA is necessary for the expression of a large number of genes. Twenty-eight out of the predicted 56 secondary metabolite gene clusters include at least one gene that is differentially expressed depending on presence or absence of veA. One of the clusters under the influence of veA is cluster 39. The absence of veA results in a downregulation of the five genes found within this cluster. Interestingly, our results indicate that the cluster is expressed mainly in sclerotia. Chemical analysis of sclerotial extracts revealed that cluster 39 is responsible for the production of aflavarin.

Indexed as

AflatoxinsAspergillus flavusFungal ProteinsGene Expression ProfilingGene Expression Regulation, FungalGenes, RegulatorMultigene FamilySecondary MetabolismTranscription FactorsTranscriptomeAflatoxinsFungal ProteinsTranscription Factors

Identifiers

PMID26209694
PMCPMC4588625
OpenAlexW2169256073

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.