Evidence map›Paper›PMID 26209667›Full record

ArticleApplied and environmental microbiology2015

Origin of the Outbreak in France of Pseudomonas syringae pv. actinidiae Biovar 3, the Causal Agent of Bacterial Canker of Kiwifruit, Revealed by a Multilocus Variable-Number Tandem-Repeat Analysis.

A Cunty, S Cesbron, F Poliakoff, M-A Jacques, C Manceau

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 31 citations in OpenAlex.

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  9. Frontiers in plant science · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

A CuntyUMR1345 Institut de Recherche en Horticulture et Semences, SFR 4207 Quasav, Institut National de la Recherche Agronomique, Beaucouzé, France Laboratoire de la Santé des Végétaux, Agence Nationale de Sécurité Sanitaire de l'Alimentation, de l'Environnement et du Travail, Angers, France.
S CesbronUMR1345 Institut de Recherche en Horticulture et Semences, SFR 4207 Quasav, Institut National de la Recherche Agronomique, Beaucouzé, France.
F PoliakoffLaboratoire de la Santé des Végétaux, Agence Nationale de Sécurité Sanitaire de l'Alimentation, de l'Environnement et du Travail, Angers, France.
M-A JacquesUMR1345 Institut de Recherche en Horticulture et Semences, SFR 4207 Quasav, Institut National de la Recherche Agronomique, Beaucouzé, France.
C ManceauLaboratoire de la Santé des Végétaux, Agence Nationale de Sécurité Sanitaire de l'Alimentation, de l'Environnement et du Travail, Angers, France charles.manceau@anses.fr.ORCID http://orcid.org/0000-0003-3590-6454
Institut de Recherche en Horticulture et Semences · FRAgence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The first outbreaks of bacterial canker of kiwifruit caused by Pseudomonas syringae pv. actinidiae biovar 3 were detected in France in 2010. P. syringae pv. actinidiae causes leaf spots, dieback, and canker that sometimes lead to the death of the vine. P. syringae pv. actinidifoliorum, which is pathogenic on kiwi as well, causes only leaf spots. In order to conduct an epidemiological study to track the spread of the epidemics of these two pathogens in France, we developed a multilocus variable-number tandem-repeat (VNTR) analysis (MLVA). MLVA was conducted on 340 strains of P. syringae pv. actinidiae biovar 3 isolated in Chile, China, France, Italy, and New Zealand and on 39 strains of P. syringae pv. actinidifoliorum isolated in Australia, France, and New Zealand. Eleven polymorphic VNTR loci were identified in the genomes of P. syringae pv. actinidiae biovar 3 ICMP 18744 and of P. syringae pv. actinidifoliorum ICMP 18807. MLVA enabled the structuring of P. syringae pv. actinidiae biovar 3 and P. syringae pv. actinidifoliorum strains in 55 and 16 haplotypes, respectively. MLVA and discriminant analysis of principal components revealed that strains isolated in Chile, China, and New Zealand are genetically distinct from P. syringae pv. actinidiae strains isolated in France and in Italy, which appear to be closely related at the genetic level. In contrast, no structuring was observed for P. syringae pv. actinidifoliorum. We developed an MLVA scheme to explore the diversity within P. syringae pv. actinidiae biovar 3 and to trace the dispersal routes of epidemic P. syringae pv. actinidiae biovar 3 in Europe. We suggest using this MLVA scheme to trace the dispersal routes of P. syringae pv. actinidiae at a global level.

Indexed as

Minisatellite RepeatsActinidiaBacterial Typing TechniquesDisease OutbreaksFranceFruitGenetic VariationMolecular Sequence DataPhylogenyPlant DiseasesPseudomonas syringae

Identifiers

PMID26209667
PMCPMC4561677
OpenAlexW2148825551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.