Evidence map›Paper›PMID 26209635›Full record

ArticleThe Journal of biological chemistry2015

NMR studies demonstrate a unique AAB composition and chain register for a heterotrimeric type IV collagen model peptide containing a natural interruption site.

Jianxi Xiao, Xiuxia Sun, Balaraman Madhan, Barbara Brodsky, Jean Baum

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 3 countries.

Jianxi Xiaothe Key Laboratory of Nonferrous Metal Chemistry and Resources Utilization of Gansu Province, State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China, From the Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854.
Xiuxia Sunthe Key Laboratory of Nonferrous Metal Chemistry and Resources Utilization of Gansu Province, State Key Laboratory of Applied Organic Chemistry, College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou 730000, China.
Balaraman Madhanthe Central Leather Research Institute, Council of Scientific and Industrial Research, Adyar, Chennai-600020, India.
Barbara Brodskythe Department of Biomedical Engineering, Tufts University, Medford, Massachusetts 02446, and barbara.brodsky@tufts.edu.
Jean BaumFrom the Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854, jean.baum@rutgers.edu.
Council of Scientific and Industrial Research · INLanzhou University · CNRutgers, The State University of New Jersey · USState Key Laboratory of Applied Organic ChemistryTufts University · US

Funding

Stuctural studies of triple-helical proteinsR01GM060048 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI BRODSKY, BARBARA M · 1999 to 2016
$5.1M
NMR STUDIES OF TRIPLE HELICAL PEPTIDESR01GM045302 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI BAUM, JEAN S · 1996 to 2019
$4.5M
NMR APPROACHES TO THE PROTEIN FOLDING PROBLEMR29GM045302 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI BAUM, JEAN S · 1991 to 1995
–
NIGMS NIH HHS GM45302NIGMS NIH HHS GM60048NIGMS NIH HHS R01 GM045302NIGMS NIH HHS R01 GM060048
6 · The paper itself

Abstract

All non-fibrillar collagens contain interruptions in the (Gly-X-Y)n repeating sequence, such as the more than 20 interruptions found in chains of basement membrane type IV collagen. Two selectively doubly labeled peptides are designed to model a site in type IV collagen with a GVG interruption in the α1(IV) and a corresponding GISLK sequence within the α2(IV) chain. CD and NMR studies on a 2:1 mixture of these two peptides support the formation of a single-component heterotrimer that maintains the one-residue staggering in the triple-helix, has a unique chain register, and contains hydrogen bonds at the interruption site. Formation of hydrogen bonds at interruption sites may provide a driving force for self-assembly and chain register in type IV and other non-fibrillar collagens. This study illustrates the potential role of interruptions in the structure, dynamics, and folding of natural collagen heterotrimers and forms a basis for understanding their biological role.

Indexed as

Amino Acid SequenceBinding SitesCircular DichroismCollagen Type IVExtracellular MatrixGlycineHumansHydrogen BondingMagnetic Resonance SpectroscopyMolecular Sequence DataNon-Fibrillar CollagensPeptidesProtein BindingProtein ConformationProtein MultimerizationProtein Structure, SecondaryCollagen Type IVGlycineNon-Fibrillar CollagensPeptidescircular dichroism (CD)collagenextracellular matrixheterotrimerinterruptionnuclear magnetic resonance (NMR)structure-function

Identifiers

PMID26209635
PMCPMC4591808
OpenAlexW1839181861

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.