Evidence map›Paper›PMID 26208853›Full record

ArticleBMC genomics2015

Common and specific downstream signaling targets controlled by Tlr2 and Tlr5 innate immune signaling in zebrafish.

Shuxin Yang, Rubén Marín-Juez, Annemarie H Meijer, Herman P Spaink

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
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  4. The Spike protein of SARS-CoV-2 signals via Tlr2 in zebrafish.Developmental and comparative immunology · 2023
    Article
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  12. Duplicated TLR5 of zebrafish functions as a heterodimeric receptor.Proceedings of the National Academy of Sciences of the United States of America · 2018
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  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Shuxin YangInstitute of Biology, Leiden University, PO Box 9502, 2300 RA, Leiden, The Netherlands.
Rubén Marín-JuezZF-screens BV, J. H. Oortweg 19, 2333 CH, Leiden, The Netherlands.
Annemarie H MeijerInstitute of Biology, Leiden University, PO Box 9502, 2300 RA, Leiden, The Netherlands.
Herman P SpainkInstitute of Biology, Leiden University, PO Box 9502, 2300 RA, Leiden, The Netherlands. h.p.spaink@biology.leidenuniv.nl.
Leiden University · NLMax Planck Institute for Heart and Lung Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAlthough the responses to many pathogen associated molecular patterns (PAMPs) in cell cultures and extracted organs are well characterized, there is little known of transcriptome responses to PAMPs in whole organisms. To characterize this in detail, we have performed RNAseq analysis of responses of zebrafish embryos to injection of PAMPs in the caudal vein at one hour after exposure. We have compared two ligands that in mammals have been shown to specifically activate the TLR2 and TLR5 receptors: Pam3CSK4 and flagellin, respectively.

resultsWe identified a group of 80 common genes that respond with high stringency selection to stimulations with both PAMPs, which included several well-known immune marker genes such as il1b and tnfa. Surprisingly, we also identified sets of 48 and 42 genes that specifically respond to either Pam3CSK4 or flagellin, respectively, after a comparative filtering approach. Remarkably, in the Pam3CSK4 specific set, there was a set of transcription factors with more than 2 fold-change, as confirmed by qPCR analyses, including cebpb, fosb, nr4a1 and egr3. We also showed that the regulation of the Pam3CSK4 and flagellin specifically responding sets is inhibited by knockdown of tlr2 or tlr5, respectively.

conclusionsOur studies show that Pam3CSK4 and flagellin can stimulate the Tlr2 and Tlr5 signaling pathways leading to common and specific responses in the zebrafish embryo system.

Indexed as

AnimalsFlagellinGene Expression Regulation, DevelopmentalImmunity, InnateLigandsLipopeptidesNF-kappa BPathogen-Associated Molecular Pattern MoleculesSignal TransductionToll-Like Receptor 2Toll-Like Receptor 5TranscriptomeZebrafishFlagellinLigandsLipopeptidesNF-kappa BPam(3)CSK(4) peptidePathogen-Associated Molecular Pattern MoleculesToll-Like Receptor 2Toll-Like Receptor 5

Identifiers

PMID26208853
PMCPMC4514945
OpenAlexW1598901177

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.