Evidence map›Paper›PMID 26206155›Full record

ArticleGenome research2015

Identifying genomic changes associated with insecticide resistance in the dengue mosquito Aedes aegypti by deep targeted sequencing.

Frederic Faucon, Isabelle Dusfour, Thierry Gaude, Vincent Navratil, Frederic Boyer, Fabrice Chandre, Patcharawan Sirisopa, Kanutcharee Thanispong, Waraporn Juntarajumnong, Rodolphe Poupardin and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 187 citations in OpenAlex.

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32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Frederic FauconLaboratoire d'Ecologie Alpine (LECA), CNRS, UMR 5553, 38041 Grenoble Cedex 9, France; Université Grenoble-Alpes, 38041 Grenoble Cedex 9, France; Environmental and Systems Biology (BEeSy), Université Grenoble-Alpes, 38041 Grenoble Cedex 9, France;
Isabelle DusfourUnité d'Entomologie Médicale, Institut Pasteur de la Guyane, 97306 Cayenne Cedex, France;
Thierry GaudeLaboratoire d'Ecologie Alpine (LECA), CNRS, UMR 5553, 38041 Grenoble Cedex 9, France; Université Grenoble-Alpes, 38041 Grenoble Cedex 9, France; Environmental and Systems Biology (BEeSy), Université Grenoble-Alpes, 38041 Grenoble Cedex 9, France;
Vincent NavratilPôle Rhône Alpes de Bioinformatique, Université Lyon 1, 69100 Villeurbanne, France;
Frederic BoyerLaboratoire d'Ecologie Alpine (LECA), CNRS, UMR 5553, 38041 Grenoble Cedex 9, France; Université Grenoble-Alpes, 38041 Grenoble Cedex 9, France; Environmental and Systems Biology (BEeSy), Université Grenoble-Alpes, 38041 Grenoble Cedex 9, France;
Fabrice ChandreInstitut de Recherche pour le Développement (IRD), Maladies Infectieuses et Vecteurs, Ecologie, Génétique, Evolution et Contrôle (IRD 224-CNRS 5290 UM1-UM2), 34394 Montpellier Cedex 5, France;
Patcharawan SirisopaDepartment of Entomology, Faculty of Agriculture, Kasetsart University, Lat Yao Chatuchak Bangkok 10900, Thailand; Center for Advanced Studies for Agriculture and Food, Kasetsart University Institute for Advanced Studies, Kasetsart University, Bangkok 10900, Thailand (CASAF, NRU-KU, Thailand);
Kanutcharee ThanispongBureau of Vector Borne Diseases, Department of Disease Control, Ministry of Public Health, Mueang, Nonthaburi 11000, Thailand;
Waraporn JuntarajumnongDepartment of Entomology, Faculty of Agriculture, Kasetsart University, Lat Yao Chatuchak Bangkok 10900, Thailand; Center for Advanced Studies for Agriculture and Food, Kasetsart University Institute for Advanced Studies, Kasetsart University, Bangkok 10900, Thailand (CASAF, NRU-KU, Thailand);
Rodolphe PoupardinVector Biology Group, Liverpool School of Tropical Medicine, L35QA Liverpool, United Kingdom.
Theeraphap ChareonviriyaphapDepartment of Entomology, Faculty of Agriculture, Kasetsart University, Lat Yao Chatuchak Bangkok 10900, Thailand; Center for Advanced Studies for Agriculture and Food, Kasetsart University Institute for Advanced Studies, Kasetsart University, Bangkok 10900, Thailand (CASAF, NRU-KU, Thailand);
Romain GirodUnité d'Entomologie Médicale, Institut Pasteur de la Guyane, 97306 Cayenne Cedex, France;
Vincent CorbelInstitut de Recherche pour le Développement (IRD), Maladies Infectieuses et Vecteurs, Ecologie, Génétique, Evolution et Contrôle (IRD 224-CNRS 5290 UM1-UM2), 34394 Montpellier Cedex 5, France; Department of Entomology, Faculty of Agriculture, Kasetsart University, Lat Yao Chatuchak Bangkok 10900, Thailand; Center for Advanced Studies for Agriculture and Food, Kasetsart University Institute for Advanced Studies, Kasetsart University, Bangkok 10900, Thailand (CASAF, NRU-KU, Thailand);
Stephane ReynaudLaboratoire d'Ecologie Alpine (LECA), CNRS, UMR 5553, 38041 Grenoble Cedex 9, France; Université Grenoble-Alpes, 38041 Grenoble Cedex 9, France; Environmental and Systems Biology (BEeSy), Université Grenoble-Alpes, 38041 Grenoble Cedex 9, France;
Jean-Philippe DavidLaboratoire d'Ecologie Alpine (LECA), CNRS, UMR 5553, 38041 Grenoble Cedex 9, France; Université Grenoble-Alpes, 38041 Grenoble Cedex 9, France; Environmental and Systems Biology (BEeSy), Université Grenoble-Alpes, 38041 Grenoble Cedex 9, France;
Centre National de la Recherche Scientifique · FRKasetsart University · THInstitut Pasteur · FRLiverpool School of Tropical Medicine · GBMinistry of Public Health · THUniversité Claude Bernard Lyon 1 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The capacity of mosquitoes to resist insecticides threatens the control of diseases such as dengue and malaria. Until alternative control tools are implemented, characterizing resistance mechanisms is crucial for managing resistance in natural populations. Insecticide biodegradation by detoxification enzymes is a common resistance mechanism; however, the genomic changes underlying this mechanism have rarely been identified, precluding individual resistance genotyping. In particular, the role of copy number variations (CNVs) and polymorphisms of detoxification enzymes have never been investigated at the genome level, although they can represent robust markers of metabolic resistance. In this context, we combined target enrichment with high-throughput sequencing for conducting the first comprehensive screening of gene amplifications and polymorphisms associated with insecticide resistance in mosquitoes. More than 760 candidate genes were captured and deep sequenced in several populations of the dengue mosquito Ae. aegypti displaying distinct genetic backgrounds and contrasted resistance levels to the insecticide deltamethrin. CNV analysis identified 41 gene amplifications associated with resistance, most affecting cytochrome P450s overtranscribed in resistant populations. Polymorphism analysis detected more than 30,000 variants and strong selection footprints in specific genomic regions. Combining Bayesian and allele frequency filtering approaches identified 55 nonsynonymous variants strongly associated with resistance. Both CNVs and polymorphisms were conserved within regions but differed across continents, confirming that genomic changes underlying metabolic resistance to insecticides are not universal. By identifying novel DNA markers of insecticide resistance, this study opens the way for tracking down metabolic changes developed by mosquitoes to resist insecticides within and among populations.

Indexed as

Genome, InsectGenomicsInsecticide ResistanceAedesAnimalsCluster AnalysisGene AmplificationHigh-Throughput Nucleotide SequencingInsecticidesLethal Dose 50Multigene FamilyMutationNitrilesPolymorphism, GeneticPyrethrinsReproducibility of ResultsdecamethrinInsecticidesNitrilesPyrethrins

Identifiers

PMID26206155
PMCPMC4561493
OpenAlexW2133892730

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.