Evidence map›Paper›PMID 26205778›Full record

ArticleNeuropharmacology2016

BONLAC: A combinatorial proteomic technique to measure stimulus-induced translational profiles in brain slices.

Heather Bowling, Aditi Bhattacharya, Guoan Zhang, Joseph Z Lebowitz, Danyal Alam, Peter T Smith, Kent Kirshenbaum, Thomas A Neubert, Christine Vogel, Moses V Chao and 1 more

Open access · greenAbstract read
In one paragraph

Article in Neuropharmacology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 58 citations in OpenAlex.

  1. Bioorthogonal Chemistry in Neurobiology: From Imaging to Proteomics.Chembiochem : a European journal of chemical biology · 2026
    Review
  2. Article
  3. Article
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  5. Review
  6. Article
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  8. Review
  9. Article
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  11. Article
  12. Article
  13. Neuronal αPflugers Archiv : European journal of physiology · 2020
    Review
  14. Article
  15. Article
  16. Proteomic Techniques to Examine Neuronal Translational Dynamics.International journal of molecular sciences · 2019
    Review
  17. Article
  18. Article
  19. Review
  20. Quantitative Comparison of Proteomes Using SILAC.Current protocols in protein science · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Heather BowlingCenter for Neural Science, New York University, New York, NY, USA.
Aditi BhattacharyaCenter for Neural Science, New York University, New York, NY, USA.
Guoan ZhangKimmel Center for Biology and Medicine at the Skirball Institute, New York University School of Medicine, USA; Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, USA.
Joseph Z LebowitzCenter for Neural Science, New York University, New York, NY, USA.
Danyal AlamCenter for Neural Science, New York University, New York, NY, USA.
Peter T SmithDepartment of Chemistry, New York University, USA.
Kent KirshenbaumDepartment of Chemistry, New York University, USA.
Thomas A NeubertKimmel Center for Biology and Medicine at the Skirball Institute, New York University School of Medicine, USA; Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, USA.
Christine VogelDepartment of Biology, Center for Genomics and Systems Biology, New York University, USA.
Moses V ChaoDepartment of Cell Biology, New York University School of Medicine, USA; Department of Neuroscience and Physiology, New York University School of Medicine, USA; Department of Psychiatry, New York University School of Medicine, USA; Kimmel Center for Biology and Medicine at the Skirball Institute, New York University School of Medicine, USA.
Eric KlannCenter for Neural Science, New York University, New York, NY, USA. Electronic address: eklann@cns.nyu.edu.
New York University · USUniversity School · US

Funding

TITLE REGULATION OF NEURONAL MITOSISP01HD023315 · NICHD · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI DREYFUS, CHERYL F · 1987 to 2013
$17.5M
Protein Mass Spectrometry Core Facility for NeuroscienceP30NS050276 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEUBERT, THOMAS A · 2005 to 2015
$7.9M
MOLECULAR BIOLOGY OF THE NERVE GROWTH FACTOR RECEPTORR01NS021072 · NINDS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CHAO, MOSES VICTOR · 1985 to 2015
$5.8M
Translation Regulation in Hippocampal LTP and LTDR01NS047384 · NINDS · NEW YORK UNIVERSITY · PI KLANN, ERIC · 2005 to 2020
$5.2M
Training Systems and Integrative NeuroscienceT32MH019524 · NIMH · NEW YORK UNIVERSITY · PI KIORPES, LYNNE · 1992 to 2025
$5.2M
Reactive Oxygen Species Signaling in the HippocampusR01NS034007 · NINDS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KLANN, ERIC · 2000 to 2012
$4.2M
Gamma-Secretase cleavage of the p75 receptorR01AG025970 · NIA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CHAO, MOSES VICTOR · 2006 to 2016
$3.3M
eIF2alpha Phosphorylation in Synaptic Plasticity, Memory, and Brain DisordersR37NS034007 · NINDS · NEW YORK UNIVERSITY · PI KLANN, ERIC · 2014 to 2020
$3.3M
Robust statistical approaches for decoding protein and mRNA expression regulationR01GM113237 · NIGMS · NEW YORK UNIVERSITY · PI VOGEL, CHRISTINE · 2014 to 2017
$1.5M
Molecular Analysis of Neurotrophin ActionR56NS021072 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CHAO, MOSES VICTOR · 2011 to 2017
$882k
LTQ-Orbitrap Mass Spectrometer.S10RR027990 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEUBERT, THOMAS A · 2011 to 2011
$600k
OXIDATIVE ACTIVATION OF PKC DURING INDUCTION OF LTPR29NS034007 · NINDS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KLANN, ERIC · 1995 to 1999
–
NCRR NIH HHS RR027990NCRR NIH HHS S10 RR027990NIA NIH HHS R01 AG025970NICHD NIH HHS HD23315NICHD NIH HHS P01 HD023315NIGMS NIH HHS GM113237NIGMS NIH HHS R01 GM113237NIMH NIH HHS T32 MH019524NINDS NIH HHS NS034007NINDS NIH HHS NS047384NINDS NIH HHS NS050276NINDS NIH HHS NS21072NINDS NIH HHS P30 NS050276NINDS NIH HHS R01 NS021072NINDS NIH HHS R01 NS034007NINDS NIH HHS R01 NS047384NINDS NIH HHS R29 NS034007NINDS NIH HHS R37 NS034007NINDS NIH HHS R56 NS021072
6 · The paper itself

Abstract

Stimulus-triggered protein synthesis is critical for brain health and function. However, due to technical hurdles, de novo neuronal translation is predominantly studied in cultured cells, whereas electrophysiological and circuit analyses often are performed in brain slices. The different properties of these two experimental systems create an information gap about stimulus-induced alterations in the expression of new proteins in mature circuits. To address this, we adapted two existing techniques, BONCAT and SILAC, to a combined proteomic technique, BONLAC, for use in acute adult hippocampal slices. Using BDNF-induced protein synthesis as a proof of concept, we found alterations in expression of proteins involved in neurotransmission, trafficking, and cation binding that differed from those found in a similar screen in cultured neurons. Our results indicate important differences between cultured neurons and slices, and suggest that BONLAC could be used to dissect proteomic changes underlying synaptic events in adult circuits. This article is part of the Special Issue entitled 'Synaptopathy--from Biology to Therapy'.

Indexed as

Protein BiosynthesisAnimalsBrain-Derived Neurotrophic FactorCells, CulturedHippocampusMaleMass SpectrometryMiceMice, Inbred C57BLNeuronsProteomicsReproducibility of ResultsBrain-Derived Neurotrophic FactorBDNFBONCATBONLACde novo proteomicshippocampal sliceprotein synthesisSILACsynaptic plasticity

Identifiers

PMID26205778
PMCPMC4584208
OpenAlexW1544167131

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.