Evidence map›Paper›PMID 26205652›Full record

ArticleOrigins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life2016

The Activation of Free Dipeptides Promoted by Strong Activating Agents in Water Does not Yield Diketopiperazines.

Damien Beaufils, Sandra Jepaul, Ziwei Liu, Laurent Boiteau, Robert Pascal

Abstract read
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In one paragraph

Article in Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. The Effect of Goethites on the Polymerization of Glycine and Alanine Under Prebiotic Chemistry Conditions.Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life · 2021
    Article
  4. Article
  5. Article
  6. Environmental control programs the emergence of distinct functional ensembles from unconstrained chemical reactions.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Damien BeaufilsInstitut des Biomolécules Max Mousseron, UMR 5247, CNRS - University of Montpellier, DSBC, CC17006, Place E. Bataillon, 34095, Montpellier Cedex 5, France.
Sandra JepaulInstitut des Biomolécules Max Mousseron, UMR 5247, CNRS - University of Montpellier, DSBC, CC17006, Place E. Bataillon, 34095, Montpellier Cedex 5, France.
Ziwei LiuInstitut des Biomolécules Max Mousseron, UMR 5247, CNRS - University of Montpellier, DSBC, CC17006, Place E. Bataillon, 34095, Montpellier Cedex 5, France.
Laurent BoiteauInstitut des Biomolécules Max Mousseron, UMR 5247, CNRS - University of Montpellier, DSBC, CC17006, Place E. Bataillon, 34095, Montpellier Cedex 5, France.
Robert PascalInstitut des Biomolécules Max Mousseron, UMR 5247, CNRS - University of Montpellier, DSBC, CC17006, Place E. Bataillon, 34095, Montpellier Cedex 5, France. rpascal@univ-montp2.fr.ORCID http://orcid.org/0000-0001-9579-2503

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The activation of dipeptides was studied in the perspective of the abiotic formation of oligopeptides of significant length as a requirement for secondary structure formation. The formation of piperazin-2,5-diones (DKP), previously considered as a dead end when activating free dipeptides, was shown in this work to be efficiently suppressed when using strong activating agents (e.g., carbodiimides). This behaviour was explained by the fast formation of a 5(4H)-oxazolone intermediate at a rate that exceeds the time scale of the rotation of the peptide bond from the predominant trans-conformation into the cis-isomer required for DKP formation. No DKP was observed when using strong activating agents whereas phosphate mixed anhydrides or moderately activated esters were observed to predominantly yield DKP. The DKP side-reaction no longer constitutes a drawback for the C-terminus elongation of peptides. These results are considered as additional evidence that pathways involving strong activation are required to drive the emergence of living entities rather than close to equilibrium processes.

Indexed as

DiketopiperazinesDipeptidesOrigin of LifeDiketopiperazinesDipeptides5(4H)-oxazoloneActivationDiketopiperazineElongationPeptide

Identifiers

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.