Evidence map›Paper›PMID 26205172›Full record

ArticleBMC microbiology2015

Evaluation of matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) for identification and clustering of Neisseria gonorrhoeae.

Anna Carannante, Elena De Carolis, Paola Vacca, Antonietta Vella, Caterina Vocale, Maria Antonia De Francesco, Marco Cusini, Simonetta Del Re, Ivano Dal Conte, Antonio Cristaudo and 3 more

Abstract readEvaluation Study
In one paragraph

Article in BMC microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Biochemical Atypia in RussianMicroorganisms · 2022
    Article
  4. Article
  5. Article
  6. The Laboratory Diagnosis ofPathogens (Basel, Switzerland) · 2020
    Review
  7. Use of Andromas and Bruker MALDI-TOF MS in the identification of Neisseria.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2018
    Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Anna CarannanteDepartmentof Infectious, Parasitic & Immune-mediated Diseases, Istituto Superiore di Sanità, Rome, Italy. anna.carannante@iss.it.
Elena De CarolisIstituto di Microbiologia, Università Cattolica del Sacro Cuore, Rome, Italy. elena.decarolis@unicatt.it.
Paola VaccaDepartmentof Infectious, Parasitic & Immune-mediated Diseases, Istituto Superiore di Sanità, Rome, Italy. paola.vacca@iss.it.
Antonietta VellaIstituto di Microbiologia, Università Cattolica del Sacro Cuore, Rome, Italy. antonella.vella05@gmail.com.
Caterina VocaleUnit of Clinical Microbiology, CRREM Laboratory, St. Orsola-Malpighi, University Hospital, Bologna, Italy. cate.vocale@gmail.com.
Maria Antonia De FrancescoDipartimento di Medicina Molecolare e Traslazionale, Sezione di Microbiologia, University of Brescia, Brescia, Italy. maria.defrancesco@unibs.it.
Marco CusiniFondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy. m.cusini@policlinico.mi.it.
Simonetta Del ReMicrobiology and Virology Laboratory, Infectious Diseases, Amedeo di Savoia Hospital, Turin, Italy. simodelre@yahoo.it.
Ivano Dal ConteMD, Dip-GUM. STI Clinic, Department of Infectious Diseases, Amedeo di Savoia Hospital, Turin, Italy. ivano.dalconte@aslto2.piemonte.it.
Antonio CristaudoSan Gallicano Dermatologic Institute-IRCSS-Rome, Rome, Italy. cristaudo@ifo.it.
Patrizia OberMicrobiology and Virology Laboratory, Santa Chiara Hospital, Trento, Italy. patrizia.ober@apss.tn.it.
Maurizio SanguinettiIstituto di Microbiologia, Università Cattolica del Sacro Cuore, Rome, Italy. msanguinetti@rm.unicatt.it.
Paola StefanelliDepartmentof Infectious, Parasitic & Immune-mediated Diseases, Istituto Superiore di Sanità, Rome, Italy. paola.stefanelli@iss.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe sexually transmitted infection gonorrhea remains a public health concern for becoming resistant to drug treatments available. The purpose of this study was to evaluate the usefulness of the matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) to identify and cluster Neisseria gonorrhoeae. From a current monitoring in Italy, as part of the European Gonococcal Antimicrobial Surveillance Programme (EURO-GASP), 93 gonococci collected from 2007 to 2012 susceptible (44 isolates) and resistant (49 isolates) to cefixime were selected. Minimum Inhibitory Concentration (MIC) values for cefixime was assessed by Etest carried out in agreement with the manufacturer's instructions and interpreted referring to European Committee on Antimicrobial Susceptibility testing (EUCAST) clinical breakpoints criteria. Data obtained by N. gonorrhoeae multiantigen sequence typing (NG-MAST) and the dendrogram based on the concatenation of porB and tbpB genes were evaluated. MALDI-TOF MS, to reconfirm gonorrhea identification, analyzed single colonies from freshly grown isolates and applied directly on a ground-steel MALDI target plate. For the MALDI-TOF dendrogram cluster analysis, MSPs (Main Spectrum Profile) from each isolate were created acquiring 5000 shots from 10 technical replicates obtained from bacteria extraction.

resultsMolecular typing by NG-MAST showed 28 sequence types (STs); G1407 was the predominant accounting for 75 gonococci. All the 93 gonococci, except one, were correctly identified at species level by MALDI-TOF MS and G1407 isolates were divided into two clusters.

conclusionMALDI-TOF MS for a real-time detection and cluster analysis of gonorrhea is a promising tool for surveillance purposes. Moreover, additional studies are required to collect more data on the performance of MALDI-TOF MS for gonococci.

Indexed as

Anti-Bacterial AgentsBacteriological TechniquesCefiximeCluster AnalysisGenotypeHumansItalyMicrobial Sensitivity TestsMultilocus Sequence TypingNeisseria gonorrhoeaePhenotypeSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationAnti-Bacterial AgentsCefixime

Identifiers

PMID26205172
PMCPMC4514454

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.