Evidence map›Paper›PMID 26205122›Full record

ArticleScientific reports2015

A large-scale in vivo RNAi screen to identify genes involved in Notch-mediated follicle cell differentiation and cell cycle switches.

Dongyu Jia, Muhammed Soylemez, Gabriel Calvin, Randy Bornmann, Jamal Bryant, Cameron Hanna, Yi-Chun Huang, Wu-Min Deng

Abstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Downregulation of homeodomain protein Cut is essential forDevelopment (Cambridge, England) · 2019
    Article
  9. Functional Interactions BetweenG3 (Bethesda, Md.) · 2018
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Dongyu JiaDepartment of Biological Science, Florida State University, Tallahassee, FL 32306-4370, USA.
Muhammed SoylemezDepartment of Biological Science, Florida State University, Tallahassee, FL 32306-4370, USA.
Gabriel CalvinDepartment of Biological Science, Florida State University, Tallahassee, FL 32306-4370, USA.
Randy BornmannDepartment of Biological Science, Florida State University, Tallahassee, FL 32306-4370, USA.
Jamal BryantDepartment of Biological Science, Florida State University, Tallahassee, FL 32306-4370, USA.
Cameron HannaDepartment of Biological Science, Florida State University, Tallahassee, FL 32306-4370, USA.
Yi-Chun HuangDepartment of Biological Science, Florida State University, Tallahassee, FL 32306-4370, USA.
Wu-Min DengDepartment of Biological Science, Florida State University, Tallahassee, FL 32306-4370, USA.

Funding

Drosophila Transgenic RNAi Resource ProjectR01GM084947 · NIGMS · HARVARD MEDICAL SCHOOL · PI PERRIMON, NORBERT · 2008 to 2019
$9.8M
Notch signaling and germline-soma interactions in the Drosophila ovarian modelR01GM072562 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI DENG, WU-MIN · 2006 to 2025
$5.6M
NIGMS NIH HHS R01 GM072562NIGMS NIH HHS R01GM072562NIGMS NIH HHS R01 GM084947NIGMS NIH HHS R01-GM084947
6 · The paper itself

Abstract

During Drosophila oogenesis, follicle cells sequentially undergo three distinct cell-cycle programs: the mitotic cycle, endocycle, and gene amplification. Notch signaling plays a central role in regulating follicle-cell differentiation and cell-cycle switches; its activation is essential for the mitotic cycle/endocycle (M/E) switch. Cut, a linker between Notch signaling and cell-cycle regulators, is specifically downregulated by Notch during the endocycle stage. To determine how signaling pathways coordinate during the M/E switch and to identify novel genes involved in follicle cell differentiation, we performed an in vivo RNAi screen through induced knockdown of gene expression and examination of Cut expression in follicle cells. We screened 2205 RNAi lines and found 33 genes regulating Cut expression during the M/E switch. These genes were confirmed with the staining of two other Notch signaling downstream factors, Hindsight and Broad, and validated with multiple independent RNAi lines. We applied gene ontology software to find enriched biological meaning and compared our results with other publications to find conserved genes across tissues. Specifically, we found earlier endocycle entry in anterior follicle cells than those in the posterior, identified that the insulin-PI3K pathway participates in the precise M/E switch, and suggested Nejire as a cofactor of Notch signaling during oogenesis.

Indexed as

RNA InterferenceAnimalsCell CycleCell DifferentiationDrosophilaDrosophila ProteinsFemaleHomeodomain ProteinsNuclear ProteinsOogenesisOvarian FollicleReceptors, NotchTranscription Factorsct protein, DrosophilaDrosophila ProteinsHomeodomain ProteinsN protein, DrosophilaNuclear ProteinsReceptors, NotchTranscription Factors

Identifiers

PMID26205122
PMCPMC4513280

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.