Evidence map›Paper›PMID 26203903›Full record

ArticlePloS one2015

Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations.

UnJin Lee, John J Skinner, John Reinitz, Marsha Rich Rosner, Eun-Jin Kim

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

UnJin LeeCommittee on Genetics, Genomics, and Systems Biology, University of Chicago, Chicago, IL, United States of America.
John J SkinnerBen May Department for Cancer Research, University of Chicago, Chicago, IL, United States of America; Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, United States of America.
John ReinitzDepartments of Statistics, Ecology and Evolution, Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL, United States of America.
Marsha Rich RosnerBen May Department for Cancer Research, University of Chicago, Chicago, IL, United States of America.
Eun-Jin KimSchool of Mathematics and Statistics, University of Sheffield, Sheffield, United Kingdom.

Funding

PREDOCTORAL TRAINING IN GENETICS AND REGULATIONT32GM007197 · NIGMS · UNIVERSITY OF CHICAGO · PI ROTHMAN-DENES, LUCIA B. B · 1985 to 2020
$17.0M
Tumor-stromal interactions as targets of tumor metastasis suppressorsR01CA184494 · NCI · UNIVERSITY OF CHICAGO · PI ROSNER, MARSHA R · 2015 to 2019
$1.9M
Signaling Pathways in Neuronal CellsR01GM087630 · NIGMS · UNIVERSITY OF CHICAGO · PI ROSNER, MARSHA R · 2009 to 2013
$1.8M
NCI NIH HHS R01 CA184494NCI NIH HHS R01CA-184494NIGMS NIH HHS GM 87630NIGMS NIH HHS R01 GM087630NIGMS NIH HHS T32 GM007197
6 · The paper itself

Abstract

There has been increasing awareness in the wider biological community of the role of clonal phenotypic heterogeneity in playing key roles in phenomena such as cellular bet-hedging and decision making, as in the case of the phage-λ lysis/lysogeny and B. Subtilis competence/vegetative pathways. Here, we report on the effect of stochasticity in growth rate, cellular memory/intermittency, and its relation to phenotypic heterogeneity. We first present a linear stochastic differential model with finite auto-correlation time, where a randomly fluctuating growth rate with a negative average is shown to result in exponential growth for sufficiently large fluctuations in growth rate. We then present a non-linear stochastic self-regulation model where the loss of coherent self-regulation and an increase in noise can induce a shift from bounded to unbounded growth. An important consequence of these models is that while the average change in phenotype may not differ for various parameter sets, the variance of the resulting distributions may considerably change. This demonstrates the necessity of understanding the influence of variance and heterogeneity within seemingly identical clonal populations, while providing a mechanism for varying functional consequences of such heterogeneity. Our results highlight the importance of a paradigm shift from a deterministic to a probabilistic view of clonality in understanding selection as an optimization problem on noise-driven processes, resulting in a wide range of biological implications, from robustness to environmental stress to the development of drug resistance.

Indexed as

Biological EvolutionModels, BiologicalPhenotypeStochastic ProcessesClone CellsDrug Resistance, NeoplasmGenetic FitnessHumansNeoadjuvant TherapyNeoplasmsNeoplastic Stem CellsNonlinear DynamicsNormal DistributionSaccharomyces cerevisiaeSelection, GeneticTime Factors

Identifiers

PMID26203903
PMCPMC4512695

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.