Evidence map›Paper›PMID 26203655›Full record

ArticlePLoS genetics2015

Molecular Framework of a Regulatory Circuit Initiating Two-Dimensional Spatial Patterning of Stomatal Lineage.

Robin J Horst, Hironori Fujita, Jin Suk Lee, Amanda L Rychel, Jacqueline M Garrick, Masayoshi Kawaguchi, Kylee M Peterson, Keiko U Torii

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
18.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
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  9. Review
  10. Preventing inappropriate signals pre- and post-ligand perception by a toggle switch mechanism of ERECTA.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Asymmetric cell division in plant development.Journal of integrative plant biology · 2023
    Review
  16. Review
  17. Intragenic suppressors unravel the role of the SCREAM ACT-like domain for bHLH partner selectivity in stomatal development.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Review
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Robin J HorstHoward Hughes Medical Institute, University of Washington, Seattle, Washington, United States of America; Department of Biology, University of Washington, Seattle, Washington, United States of America.
Hironori FujitaNational Institute for Basic Biology, Okazaki, Aichi, Japan.
Jin Suk LeeHoward Hughes Medical Institute, University of Washington, Seattle, Washington, United States of America; Department of Biology, University of Washington, Seattle, Washington, United States of America.
Amanda L RychelDepartment of Biology, University of Washington, Seattle, Washington, United States of America.
Jacqueline M GarrickDepartment of Biology, University of Washington, Seattle, Washington, United States of America.
Masayoshi KawaguchiNational Institute for Basic Biology, Okazaki, Aichi, Japan.
Kylee M PetersonDepartment of Biology, University of Washington, Seattle, Washington, United States of America.
Keiko U ToriiHoward Hughes Medical Institute, University of Washington, Seattle, Washington, United States of America; Department of Biology, University of Washington, Seattle, Washington, United States of America.
University of Washington · USHoward Hughes Medical Institute · USNational Institute for Basic Biology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stomata, valves on the plant epidermis, are critical for plant growth and survival, and the presence of stomata impacts the global water and carbon cycle. Although transcription factors and cell-cell signaling components regulating stomatal development have been identified, it remains unclear as to how their regulatory interactions are translated into two-dimensional patterns of stomatal initial cells. Using molecular genetics, imaging, and mathematical simulation, we report a regulatory circuit that initiates the stomatal cell-lineage. The circuit includes a positive feedback loop constituting self-activation of SCREAMs that requires SPEECHLESS. This transcription factor module directly binds to the promoters and activates a secreted signal, EPIDERMAL PATTERNING FACTOR2, and the receptor modifier TOO MANY MOUTHS, while the receptor ERECTA lies outside of this module. This in turn inhibits SPCH, and hence SCRMs, thus constituting a negative feedback loop. Our mathematical model accurately predicts all known stomatal phenotypes with the inclusion of two additional components to the circuit: an EPF2-independent negative-feedback loop and a signal that lies outside of the SPCH•SCRM module. Our work reveals the intricate molecular framework governing self-organizing two-dimensional patterning in the plant epidermis.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCell CommunicationCell LineageComputer SimulationDNA-Binding ProteinsGene Expression Regulation, PlantModels, TheoreticalPlant StomataProtein Serine-Threonine KinasesReceptors, Cell SurfaceSignal TransductionTranscription FactorsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsEPF2 protein, ArabidopsisER protein, ArabidopsisICE2 protein, ArabidopsisProtein Serine-Threonine KinasesReceptors, Cell SurfaceSPEECHLESS protein, Arabidopsistoo many mouths protein, ArabidopsisTranscription Factors

Identifiers

PMID26203655
PMCPMC4512730
OpenAlexW961462140

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.