Evidence map›Paper›PMID 26203344›Full record

ArticleStandards in genomic sciences2015

Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark.

Siyu Zhang, Dan Wang, Yihua Wang, Henrik Hasman, Frank M Aarestrup, Hend A Alwathnani, Yong-Guan Zhu, Christopher Rensing

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Effect of high-copper diet on transference ofFrontiers in veterinary science · 2023
    Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Selection and dissemination of antimicrobial resistance in Agri-food production.Antimicrobial resistance and infection control · 2019
    Review
  10. Antimicrobial Resistance inMicrobiology spectrum · 2018
    Review
  11. Review
  12. Comparative Genomics ofFrontiers in microbiology · 2017
    Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 3 countries.

Siyu ZhangDepartment of Plant and Environmental Science, University of Copenhagen, Frederiksberg, Denmark ; State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China.
Dan WangState Key Laboratory of Agricultural Microbiology, College of Life Sciences and Technology, HuaZhong Agricultural University, Wuhan, China.
Yihua WangDepartment of Plant and Environmental Science, University of Copenhagen, Frederiksberg, Denmark.
Henrik HasmanNational Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark.
Frank M AarestrupNational Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark.
Hend A AlwathnaniDepartment of Botany and Microbiology, King Saud University, Riyadh, Saudi Arabia.
Yong-Guan ZhuState Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China ; Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China.
Christopher RensingDepartment of Plant and Environmental Science, University of Copenhagen, Frederiksberg, Denmark ; Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China.
Technical University of Denmark · DKUniversity of Copenhagen · DKHuazhong Agricultural University · CNInstitute of Urban Environment · CNKing Saud University · SAResearch Center for Eco-Environmental Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Six strains of Enterococcus faecalis (S1, S12, S17, S18, S19 and S32) were isolated from copper fed pigs in Denmark. These Gram-positive bacteria within the genus Enterococcus are able to survive a variety of physical and chemical challenges by the acquisition of diverse genetic elements. The genome of strains S1, S12, S17, S18, S19 and S32 contained 2,615, 2,769, 2,625, 2,804, 2,853 and 2,935 protein-coding genes, with 41, 42, 27, 42, 32 and 44 genes encoding antibiotic and metal resistance, respectively. Differences between Cu resistant and sensitive E. faecalis strains, and possible co-transfer of Cu and antibiotic resistance determinants were detected through comparative genome analysis.

Indexed as

Antibiotic resistanceComparative genomicsCopper resistanceEnterococcus faecalisGenome sequence

Identifiers

PMID26203344
PMCPMC4511184
OpenAlexW1549902448

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.