Evidence map›Paper›PMID 26203342›Full record

ArticleStandards in genomic sciences2015

High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413.

Sofie E De Meyer, Elena Fabiano, Rui Tian, Peter Van Berkum, Rekha Seshadri, Tbk Reddy, Victor Markowitz, Natalia Ivanova, Amrita Pati, Tanja Woyke and 3 more

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Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

13 authors.

Sofie E De MeyerCentre for Rhizobium Studies, Murdoch University, Murdoch, WA, Australia.
Elena FabianoInstituto de Investigaciones Biológicas Clemente Estable, Montevideo, Uruguay.
Rui TianCentre for Rhizobium Studies, Murdoch University, Murdoch, WA, Australia.
Peter Van BerkumSoybean Genomics and improvement laboratory Bldg 006, BARC-West USDA ARS, 10300 Baltimore Blvd, Beltsville 20705, MD, USA.
Rekha SeshadriDOE Joint Genome Institute, Walnut Creek, CA, USA.
Tbk ReddyDOE Joint Genome Institute, Walnut Creek, CA, USA.
Victor MarkowitzBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Natalia IvanovaDOE Joint Genome Institute, Walnut Creek, CA, USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, CA, USA.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, CA, USA.
John HowiesonCentre for Rhizobium Studies, Murdoch University, Murdoch, WA, Australia.
Nikos KyrpidesDOE Joint Genome Institute, Walnut Creek, CA, USA ; Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.
Wayne ReeveCentre for Rhizobium Studies, Murdoch University, Murdoch, WA, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Burkholderia sp. strain UYPR1.413 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida collected at the Angico plantation, Mandiyu, Uruguay, in December 2006. A survey of symbionts of P. rigida in Uruguay demonstrated that this species is nodulated predominantly by Burkholderia microsymbionts. Moreover, Burkholderia sp. strain UYPR1.413 is a highly efficient nitrogen fixing symbiont with this host. Currently, the only other sequenced isolate to fix with this host is Cupriavidus sp. UYPR2.512. Therefore, Burkholderia sp. strain UYPR1.413 was selected for sequencing on the basis of its environmental and agricultural relevance to issues in global carbon cycling, alternative energy production, and biogeochemical importance, and is part of the GEBA-RNB project. Here we describe the features of Burkholderia sp. strain UYPR1.413, together with sequence and annotation. The 10,373,764 bp high-quality permanent draft genome is arranged in 336 scaffolds of 342 contigs, contains 9759 protein-coding genes and 77 RNA-only encoding genes.

Indexed as

BetaproteobacteriaGEBA-RNBNitrogen fixationRhizobiaRoot-nodule bacteria

Identifiers

PMID26203342
PMCPMC4511699

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