Evidence map›Paper›PMID 26203341›Full record

ArticleStandards in genomic sciences2015

Complete genome sequence of Salmonella enterica subspecies arizonae str. RKS2983.

Chun-Xiao Wang, Song-Ling Zhu, Xiao-Yu Wang, Ye Feng, Bailiang Li, Yong-Guo Li, Randal N Johnston, Gui-Rong Liu, Jin Zhou, Shu-Lin Liu

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Virulence Comparison ofMicroorganisms · 2021
    Article
  2. The Salmonella enterica Serovar TyphiJournal of bacteriology · 2020
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Chun-Xiao WangGenomics Research Center, Harbin Medical University, Harbin, China.
Song-Ling ZhuGenomics Research Center, Harbin Medical University, Harbin, China.
Xiao-Yu WangGenomics Research Center, Harbin Medical University, Harbin, China.
Ye FengInstitute for Translational Medicine, Zhejiang University School of Medicine, Hangzhou, China.
Bailiang LiGenomics Research Center, Harbin Medical University, Harbin, China.
Yong-Guo LiDepartment of Infectious Diseases, The First Affiliated Hospital, Harbin Medical University, Harbin, China.
Randal N JohnstonDepartment of Biochemistry and Molecular Biology, University of Calgary, Calgary, Canada.
Gui-Rong LiuGenomics Research Center, Harbin Medical University, Harbin, China.
Jin ZhouDepartment of Hematology, The First Affiliated Hospital, Harbin Medical University, Harbin, China.
Shu-Lin LiuGenomics Research Center, Harbin Medical University, Harbin, China ; Department of Infectious Diseases, The First Affiliated Hospital, Harbin Medical University, Harbin, China ; Department of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Harbin Medical University · CNFirst Affiliated Hospital of Harbin Medical University · CNUniversity of Calgary · CAZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salmonella arizonae (also called Salmonella subgroup IIIa) is a Gram-negative, non-spore-forming, motile, rod-shaped, facultatively anaerobic bacterium. S. arizonae strain RKS2983 was isolated from a human in California, USA. S. arizonae lies somewhere between Salmonella subgroups I (human pathogens) and V (also called S. bongori; usually non-pathogenic to humans) and so is an ideal model organism for studies of bacterial evolution from non-human pathogen to human pathogens. We hence sequenced the genome of RKS2983 for clues of genomic events that might have led to the divergence and speciation of Salmonella into distinct lineages with diverse host ranges and pathogenic features. The 4,574,836 bp complete genome contains 4,203 protein-coding genes, 82 tRNA genes and 7 rRNA operons. This genome contains several characteristics not reported to date in Salmonella subgroup I or V and may provide information about the genetic divergence of Salmonella pathogens.

Indexed as

Facultative anaerobeGenomic evolutionHost-adaptedSalmonella pathogenicity islandsS. enterica subspecies arizonae RKS2983

Identifiers

PMID26203341
PMCPMC4511000
OpenAlexW1580778958

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.