Evidence map›Paper›PMID 26203335›Full record

ArticleStandards in genomic sciences2015

High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov.

Simon J McIlroy, Alla Lapidus, Trine R Thomsen, James Han, Matthew Haynes, Elizabeth Lobos, Marcel Huntemann, Amrita Pati, Natalia N Ivanova, Victor Markowitz and 5 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. MiDAS: the field guide to the microbes of activated sludge.Database : the journal of biological databases and curation · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Simon J McIlroyDepartment of Chemistry and Bioscience, Centre for Microbial Communities, Aalborg University, Aalborg, Denmark.
Alla LapidusTheodosius Dobzhansky Center for Genome Bionformatics, St. Petersburg State University, St. Petersburg, Russia ; Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia.
Trine R ThomsenDepartment of Chemistry and Bioscience, Centre for Microbial Communities, Aalborg University, Aalborg, Denmark.
James HanDOE Joint Genome Institute, Walnut Creek, California, USA.
Matthew HaynesDOE Joint Genome Institute, Walnut Creek, California, USA.
Elizabeth LobosDOE Joint Genome Institute, Walnut Creek, California, USA.
Marcel HuntemannDOE Joint Genome Institute, Walnut Creek, California, USA.
Amrita PatiDOE Joint Genome Institute, Walnut Creek, California, USA.
Natalia N IvanovaDOE Joint Genome Institute, Walnut Creek, California, USA.
Victor MarkowitzBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Susanne VerbargDSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany.
Tanja WoykeDOE Joint Genome Institute, Walnut Creek, California, USA.
Hans-Peter KlenkSchool of Biology, Newcastle University, Newcastle upon Tyne, United Kingdom.
Nikos KyrpidesDOE Joint Genome Institute, Walnut Creek, California, USA ; Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.
Per H NielsenDepartment of Chemistry and Bioscience, Centre for Microbial Communities, Aalborg University, Aalborg, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Meganema perideroedes Gr1(T) is a filamentous bacterium isolated from an activated sludge wastewater treatment plant where it is implicated in poor sludge settleability (bulking). M. perideroedes is the sole described species of the genus Meganema and of the proposed novel family "Meganemaceae". Here we describe the features of the type strain Gr1(T) along with its annotated genome sequence. The 3,409,949 bp long draft genome consists of 22 scaffolds with 3,033 protein-coding and 59 RNA genes and is a part of Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes KMG project. Notably, genome annotation indicated the potential for facultative methylotrophy. However, the ability to utilize methanol as a carbon source could not be empirically demonstrated for the type strain or for in situ Meganema spp. strains.

Indexed as

Activated sludgeBulkingFacultative methylotrophFilamentousMeganemaMeganemaceaeWastewater

Identifiers

PMID26203335
PMCPMC4511698

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.