Evidence map›Paper›PMID 26203334›Full record

ArticleStandards in genomic sciences2015

Complete genome sequence of endophytic nitrogen-fixing Klebsiella variicola strain DX120E.

Li Lin, Chunyan Wei, Mingyue Chen, Hongcheng Wang, Yuanyuan Li, Yangrui Li, Litao Yang, Qianli An

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Complete genome sequence ofMicrobiology resource announcements · 2024
    Article
  6. Coexistence of blaAnnals of clinical microbiology and antimicrobials · 2024
    Article
  7. Global Emergence and Genomic Epidemiology ofInfection and drug resistance · 2024
    Article
  8. Article
  9. Article
  10. The Diversity, Resistance Profiles and Plasmid Content ofAntibiotics (Basel, Switzerland) · 2023
    Article
  11. Seeds ofInternational journal of molecular sciences · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Unraveling theMicroorganisms · 2022
    Article
  18. Diatraea saccharalis harbors microorganisms that can affect growth of sugarcane stalk-dwelling fungi.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Li Lin *Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture; Guangxi Key Laboratory of Sugarcane Genetic Improvement; Sugarcane Research Institute, Guangxi Academy of Academy of Agricultural Sciences; Sugarcane Research Center, Chinese Academy of Agricultural Sciences, Nanning, China.
Chunyan Wei *State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangxi University, Nanning, China.
Mingyue Chen *State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China.
Hongcheng WangState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China.
Yuanyuan LiState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China.
Yangrui LiKey Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture; Guangxi Key Laboratory of Sugarcane Genetic Improvement; Sugarcane Research Institute, Guangxi Academy of Academy of Agricultural Sciences; Sugarcane Research Center, Chinese Academy of Agricultural Sciences, Nanning, China.
Litao YangKey Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture; Guangxi Key Laboratory of Sugarcane Genetic Improvement; Sugarcane Research Institute, Guangxi Academy of Academy of Agricultural Sciences; Sugarcane Research Center, Chinese Academy of Agricultural Sciences, Nanning, China.
Qianli AnState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China.
Guangxi University · CNState Key Laboratory of Rice BiologyZhejiang University · CNState Key Laboratory For Conservation and Utilization of Subtropical Agro-BioresourcesSugarcane Research Center (Brazil) · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Klebsiella variicola strain DX120E (=CGMCC 1.14935) is an endophytic nitrogen-fixing bacterium isolated from sugarcane crops grown in Guangxi, China and promotes sugarcane growth. Here we summarize the features of the strain DX120E and describe its complete genome sequence. The genome contains one circular chromosome and two plasmids, and contains 5,718,434 nucleotides with 57.1% GC content, 5,172 protein-coding genes, 25 rRNA genes, 87 tRNA genes, 7 ncRNA genes, 25 pseudo genes, and 2 CRISPR repeats.

Indexed as

EndophyteKlebsiella pneumoniaeKlebsiella variicolaNitrogen fixationPathogenicityPlant growth-promoting bacteriaSugarcane

Identifiers

PMID26203334
PMCPMC4511632
OpenAlexW2111474747

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.