Evidence map›Paper›PMID 26203328›Full record

ArticleStandards in genomic sciences2015

Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-S.

Tobias Goris, Bastian Hornung, Thomas Kruse, Anika Reinhold, Martin Westermann, Peter J Schaap, Hauke Smidt, Gabriele Diekert

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Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

8 authors.

Tobias GorisInstitut für Mikrobiologie, Lehrstuhl für Angewandte und Ökologische Mikrobiologie, University of Jena, Philosophenweg 12, Jena D-07743, Germany.
Bastian HornungLaboratory of Microbiology, Wageningen University, Wageningen 6703 HB, The Netherlands ; Laboratory of Systems and Synthetic Biology, Wageningen University, Wageningen 6703 HB, The Netherlands.
Thomas KruseLaboratory of Microbiology, Wageningen University, Wageningen 6703 HB, The Netherlands.
Anika ReinholdInstitut für Mikrobiologie, Lehrstuhl für Angewandte und Ökologische Mikrobiologie, University of Jena, Philosophenweg 12, Jena D-07743, Germany.
Martin WestermannElectron Microscopy Center of the University Hospital Jena, Friedrich Schiller University, Jena, Germany.
Peter J SchaapLaboratory of Systems and Synthetic Biology, Wageningen University, Wageningen 6703 HB, The Netherlands.
Hauke SmidtLaboratory of Microbiology, Wageningen University, Wageningen 6703 HB, The Netherlands.
Gabriele DiekertInstitut für Mikrobiologie, Lehrstuhl für Angewandte und Ökologische Mikrobiologie, University of Jena, Philosophenweg 12, Jena D-07743, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This genome report describes the draft genome and the physiological characteristics of Desulfitobacterium hafniense PCE-S, a Gram-positive bacterium known to dechlorinate tetrachloroethene (PCE) to dichloroethene by a PCE reductive dehalogenase. The draft genome has a size of 5,666,696 bp with a G + C content of 47.3%. The genome is very similar to the already sequenced Desulfitobacterium hafniense Y51 and the type strain DCB-2. We identified two complete reductive dehalogenase (rdh) genes in the genome of D. hafniense PCE-S, one of which encodes PceA, the PCE reductive dehalogenase, and is located on a transposon. Interestingly, this transposon structure differs from the PceA-containing transposon of D. hafniense Y51. The second rdh encodes an unknown reductive dehalogenase, highly similar to rdhA 7 found in D. hafniense DCB-2, in which the corresponding gene is disrupted. This reductive dehalogenase might be responsible for the reductive dechlorination of 2,4,5-trichlorophenol and pentachlorophenol, which is mediated by D. hafniense PCE-S in addition to the reductive dechlorination of PCE.

Indexed as

Anaerobic respirationBioremediationChlorinated ethenesChlorinated phenolsOrganohalide respirationReductive dechlorinationReductive dehalogenase

Identifiers

PMID26203328
PMCPMC4511579

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