Evidence map›Paper›PMID 26202963›Full record

ArticleNucleic acids research2015

Deciphering the principles that govern mutually exclusive expression of Plasmodium falciparum clag3 genes.

Núria Rovira-Graells, Valerie M Crowley, Cristina Bancells, Sofía Mira-Martínez, Lluís Ribas de Pouplana, Alfred Cortés

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 40 citations in OpenAlex.

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  17. From Genes to Transcripts, a Tightly Regulated Journey inFrontiers in cellular and infection microbiology · 2020
    Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Núria Rovira-GraellsISGlobal, Barcelona Ctr. Int. Health Res. (CRESIB), Hospital Clínic-Universitat de Barcelona, 08036 Barcelona, Catalonia, Spain Institute for Research in Biomedicine (IRB), 08028 Barcelona, Catalonia, Spain.
Valerie M CrowleyInstitute for Research in Biomedicine (IRB), 08028 Barcelona, Catalonia, Spain.
Cristina BancellsISGlobal, Barcelona Ctr. Int. Health Res. (CRESIB), Hospital Clínic-Universitat de Barcelona, 08036 Barcelona, Catalonia, Spain.
Sofía Mira-MartínezISGlobal, Barcelona Ctr. Int. Health Res. (CRESIB), Hospital Clínic-Universitat de Barcelona, 08036 Barcelona, Catalonia, Spain.
Lluís Ribas de PouplanaInstitute for Research in Biomedicine (IRB), 08028 Barcelona, Catalonia, Spain Catalan Institution for Research and Advanced Studies (ICREA), 08010 Barcelona, Catalonia, Spain.
Alfred CortésISGlobal, Barcelona Ctr. Int. Health Res. (CRESIB), Hospital Clínic-Universitat de Barcelona, 08036 Barcelona, Catalonia, Spain Institute for Research in Biomedicine (IRB), 08028 Barcelona, Catalonia, Spain Catalan Institution for Research and Advanced Studies (ICREA), 08010 Barcelona, Catalonia, Spain alfred.cortes@cresib.cat.ORCID http://orcid.org/0000-0003-0730-6582
Institute for Research in Biomedicine · ESBarcelona Institute for Global Health · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The product of the Plasmodium falciparum genes clag3.1 and clag3.2 plays a fundamental role in malaria parasite biology by determining solute transport into infected erythrocytes. Expression of the two clag3 genes is mutually exclusive, such that a single parasite expresses only one of the two genes at a time. Here we investigated the properties and mechanisms of clag3 mutual exclusion using transgenic parasite lines with extra copies of clag3 promoters located either in stable episomes or integrated in the parasite genome. We found that the additional clag3 promoters in these transgenic lines are silenced by default, but under strong selective pressure parasites with more than one clag3 promoter simultaneously active are observed, demonstrating that clag3 mutual exclusion is strongly favored but it is not strict. We show that silencing of clag3 genes is associated with the repressive histone mark H3K9me3 even in parasites with unusual clag3 expression patterns, and we provide direct evidence for heterochromatin spreading in P. falciparum. We also found that expression of a neighbor ncRNA correlates with clag3.1 expression. Altogether, our results reveal a scenario where fitness costs and non-deterministic molecular processes that favor mutual exclusion shape the expression patterns of this important gene family.

Indexed as

Gene Expression RegulationGenes, ProtozoanGene SilencingGenes, ReporterHeterochromatinHistonesMultigene FamilyPlasmidsPlasmodium falciparumPromoter Regions, GeneticRNA, UntranslatedTranscriptional ActivationHeterochromatinHistonesRNA, Untranslated

Identifiers

PMID26202963
PMCPMC4787829
OpenAlexW1801940882

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.