Evidence map›Paper›PMID 26202473›Full record

ArticleProtoplasma2016

Ubiquitous distribution of helmchrome in phototactic swarmers of the stramenopiles.

Gang Fu, Chikako Nagasato, Takahiro Yamagishi, Hiroshi Kawai, Kazuo Okuda, Yoshitake Takao, Takeo Horiguchi, Taizo Motomura

Abstract read
PubMed Publisher
In one paragraph

Article in Protoplasma, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  4. Directly light-regulated binding of RGS-LOV photoreceptors to anionic membrane phospholipids.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  5. Review
  6. Article
  7. Functional and topological diversity of LOV domain photoreceptors.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Gang FuMuroran Marine Station, Field Science Center for Northern Biosphere, Hokkaido University, Muroran, 051-0013, Japan.
Chikako NagasatoMuroran Marine Station, Field Science Center for Northern Biosphere, Hokkaido University, Muroran, 051-0013, Japan.
Takahiro YamagishiResearch Center for Inland Seas, Kobe University, Rokkodai, Nadaku, Kobe, 657-8501, Japan.
Hiroshi KawaiResearch Center for Inland Seas, Kobe University, Rokkodai, Nadaku, Kobe, 657-8501, Japan.
Kazuo OkudaGraduate School of Integrated Arts and Sciences, Kochi University, Kochi, 780-8520, Japan.
Yoshitake TakaoFaculty of Marine Bioscience, Fukui Prefectural University, Obama, 917-0003, Japan.
Takeo HoriguchiFaculty of Science, Hokkaido University, Sapporo, 060-0810, Japan.
Taizo MotomuraMuroran Marine Station, Field Science Center for Northern Biosphere, Hokkaido University, Muroran, 051-0013, Japan. motomura@fsc.hokudai.ac.jp.
Hokkaido University · JPKobe University · JPFukui Prefectural University · JPKōchi University · JPMuroran Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most swarmers (swimming cells) of the stramenopile group, ranging from unicellular protist to giant kelps (brown algae), have two heterogeneous flagella: a long anterior flagellum (AF) and a relatively shorter posterior flagellum (PF). These flagellated cells often exhibit phototaxis upon light stimulation, although the mechanism by which how the phototactic response is regulated remains largely unknown. A flavoprotein concentrating at the paraflagellar body (PFB) on the basal part of the PF, which can emit green autofluorescence under blue light irradiance, has been proposed as a possible blue light photoreceptor for brown algal phototaxis although the nature of the flavoprotein still remains elusive. Recently, we identified helmchrome as a PF-specific flavoprotein protein in a LC-MS/MS-based proteomics study of brown algal flagella (Fu et al. 2014). To verify the conservation of helmchrome, in the present study, the absence or presence and the localization of helmchrome in swarmers of various algal species were investigated. The results showed that helmchrome was only detected in phototactic swarmers but not the non-phototactic ones of the stramenopile group. Electron microscopy further revealed that the helmchrome detectable swarmers bear a conserved PFB-eyespot complex, which may serve as structural basis for light sensing. It is speculated that all three conserved properties: helmchrome, the PFB structure, and the eyespot apparatus, will be essential parts for phototaxis of stramenopile swarmers.

Indexed as

ChlorophytaFlagellaFlavoproteinsLightMicroscopy, Electron, TransmissionPhaeophyceaePhotoreceptors, PlantPhototaxisPhylogenyProtein DomainsProteomicsStramenopilesTandem Mass SpectrometryFlavoproteinsPhotoreceptors, PlantBrown algaeFlagellaHelmchromePhotoreceptorPhototaxisStramenopiles

Identifiers

PMID26202473
OpenAlexW960789703

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.