Evidence map›Paper›PMID 26200875›Full record

ArticleBiophysical journal2015

Calcium ions modulate the mechanics of tomato bushy stunt virus.

Aida Llauró, Emilia Coppari, Francesca Imperatori, Anna R Bizzarri, José R Castón, Luca Santi, Salvatore Cannistraro, Pedro J de Pablo

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
6.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Protocol for AFM Nanoindentation of Viruses and Protein Cages.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
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  13. Exploring the role of genome and structural ions in preventing viral capsid collapse during dehydration.Journal of physics. Condensed matter : an Institute of Physics journal · 2018
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Aida LlauróDepartment of Condensed Matter Physics and Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid,. Madrid, Spain.
Emilia CoppariBiophysics and Nanoscience Centre, DEB, Università della Tuscia, Viterbo, Italy.
Francesca ImperatoriDepartment of Agriculture, Forests, Nature and Energy (DAFNE), Università della Tuscia, Viterbo, Italy.
Anna R BizzarriBiophysics and Nanoscience Centre, DEB, Università della Tuscia, Viterbo, Italy.
José R CastónDepartment of Macromolecular Structure, Centro Nacional de Biotecnología/CSIC, Madrid Spain.
Luca SantiDepartment of Agriculture, Forests, Nature and Energy (DAFNE), Università della Tuscia, Viterbo, Italy.
Salvatore CannistraroBiophysics and Nanoscience Centre, DEB, Università della Tuscia, Viterbo, Italy.
Pedro J de PabloDepartment of Condensed Matter Physics and Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid,. Madrid, Spain. Electronic address: p.j.depablo@uam.es.
Università degli Studi della Tuscia · ITUniversidad Autónoma de Madrid · ESCentro Nacional de Biotecnología · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viral particles are endowed with physicochemical properties whose modulation confers certain metastability to their structures to fulfill each task of the viral cycle. Here, we investigate the effects of swelling and ion depletion on the mechanical stability of individual tomato bushy stunt virus nanoparticles (TBSV-NPs). Our experiments show that calcium ions modulate the mechanics of the capsid: the sequestration of calcium ions from the intracapsid binding sites reduces rigidity and resilience in ∼24% and 40%, respectively. Interestingly, mechanical deformations performed on native TBSV-NPs induce an analogous result. In addition, TBSV-NPs do not show capsomeric vacancies after surpassing the elastic limit. We hypothesize that even though there are breakages among neighboring capsomers, RNA-capsid protein interaction prevents the release of capsid subunits. This work shows the mechanical role of calcium ions in viral shell stability and identifies TBSV-NPs as malleable platforms based on protein cages for cargo transportation at the nanoscale.

Indexed as

CalciumElasticityIonsMicroscopy, Atomic ForceMicroscopy, Electron, TransmissionNanoparticlesNicotianaTombusvirusCalciumIons

Identifiers

PMID26200875
PMCPMC4621496
OpenAlexW1490769960

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.