Evidence map›Paper›PMID 26199933›Full record

ArticleInternational journal of genomics2015

The Glycine max cv. Enrei Genome for Improvement of Japanese Soybean Cultivars.

Michihiko Shimomura, Hiroyuki Kanamori, Setsuko Komatsu, Nobukazu Namiki, Yoshiyuki Mukai, Kanako Kurita, Kaori Kamatsuki, Hiroshi Ikawa, Ryoichi Yano, Masao Ishimoto and 2 more

Abstract read
In one paragraph

Article in International journal of genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. International journal of molecular sciences · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. A single-nucleotide insertion in Rxp confers durable resistance to bacterial pustule in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. The elite variations in germplasms for soybean breeding.Molecular breeding : new strategies in plant improvement · 2023
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Impacts of genomic research on soybean improvement in East Asia.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Michihiko ShimomuraMitsubishi Space Software Co., Ltd., Takezono, Tsukuba, Ibaraki 305-0032, Japan.
Hiroyuki KanamoriNational Institute of Agrobiological Sciences, Owashi, Tsukuba, Ibaraki 305-8634, Japan.
Setsuko KomatsuNARO Institute of Crop Sciences, Kannondai, Tsukuba, Ibaraki 305-8518, Japan.
Nobukazu NamikiMitsubishi Space Software Co., Ltd., Takezono, Tsukuba, Ibaraki 305-0032, Japan.
Yoshiyuki MukaiNational Institute of Agrobiological Sciences, Owashi, Tsukuba, Ibaraki 305-8634, Japan.
Kanako KuritaNational Institute of Agrobiological Sciences, Owashi, Tsukuba, Ibaraki 305-8634, Japan.
Kaori KamatsukiMitsubishi Space Software Co., Ltd., Takezono, Tsukuba, Ibaraki 305-0032, Japan.
Hiroshi IkawaMitsubishi Space Software Co., Ltd., Takezono, Tsukuba, Ibaraki 305-0032, Japan.
Ryoichi YanoUniversity of Tsukuba, Tennodai, Tsukuba, Ibaraki 305-0006, Japan.
Masao IshimotoNational Institute of Agrobiological Sciences, Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
Akito KagaNational Institute of Agrobiological Sciences, Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
Yuichi KatayoseNational Institute of Agrobiological Sciences, Owashi, Tsukuba, Ibaraki 305-8634, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We elucidated the genome sequence of Glycine max cv. Enrei to provide a reference for characterization of Japanese domestic soybean cultivars. The whole genome sequence obtained using a next-generation sequencer was used for reference mapping into the current genome assembly of G. max cv. Williams 82 obtained by the Soybean Genome Sequencing Consortium in the USA. After sequencing and assembling the whole genome shotgun reads, we obtained a data set with about 928 Mbs total bases and 60,838 gene models. Phylogenetic analysis provided glimpses into the ancestral relationships of both cultivars and their divergence from the complex that include the wild relatives of soybean. The gene models were analyzed in relation to traits associated with anthocyanin and flavonoid biosynthesis and an overall profile of the proteome. The sequence data are made available in DAIZUbase in order to provide a comprehensive informatics resource for comparative genomics of a wide range of soybean cultivars in Japan and a reference tool for improvement of soybean cultivars worldwide.

Identifiers

PMID26199933
PMCPMC4493290

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.